Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0376 ATGGACAAGGCACGATTTGGGGTTTTCTTCATATTGTTCATTCTCCTTGGTTCTCAGATGGTAGTAGAAACTGAGGGAAGGCACTGTGAGTCAAAGAGCCATCGATTTAAAGGGATGTGCCTAAGCAATCACAATTGCGCTTCAGTGTGCCATCTTGAAGGTTTCACAGGTGGTAAGTGCCGTGGGTTCCGAAGACGCTGCTTCTGCGCCAAGCATTGCTAA 222 0.473 MDKARFGVFFILFILLGSQMVVETEGRHCESKSHRFKGMCLSNHNCASVCHLEGFTGGKCRGFRRRCFCAKHC* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0376 73 Gene3D - 27 73 IPR036574 -
Apr1g0376 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Apr1g0376 73 PANTHER DEFENSIN-LIKE PROTEIN 1 1 73 - -
Apr1g0376 73 CDD Knot1 40 69 IPR003614 GO:0006952
Apr1g0376 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Apr1g0376 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Apr1g0376 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Apr1g0376 73 SMART gth_4 28 73 IPR003614 GO:0006952
Apr1g0376 73 PANTHER DEFENSIN 1 73 - -
Apr1g0376 73 Pfam Gamma-thionin family 27 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0376 Apr-Chr1 4715250 4715562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0376 8 73 Plant Defensins Gene Families AT2G02130 65.152 8.27e-26 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0376 - - gmx:100788332 129.028