Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0372 ATGTCGAAACCCAACACTGGAACCAGCTCGGCACCAACGAAACCGGCGTGGGTCCTCCCGTACCCAACGGAAAACCTGAGGGAAGCGTACACGCTGGGGCGAAAGCTGGGTCAAGGTCAATTCGGGACAACGTTTCTGTGCACGCACAACGCCACGGGTCGCAAATACGCGTGCAAGTCAATTCCGAAGCGGAAGCTACTGTGCAAGGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTGTCTGAGCAACCTAACGTGGTGAGGATCCACGGCACGTACGAGGACCATTCCTCCGTTCACTTGGTGATGGAGCTTTGCGAAGGTGGCGAGTTGTTCGATAGGATCGTGCGGAAGGGGCAATACAGTGAGAGAGAAGCTGCGAAGTTGATTAAGACTATTGTTGAGGTTGTTGAGGCTTGTCATTCTCTTGGAGTTATGCACAGAGATCTTAAACCTGAGAATTTCTTGTTCGATACTGTTGAGGAAGATGCTAAGCTCAAAACCACTGATTTCGGGTTGTCTGTTTTTTATAAGCCAGGTGAAACCTTTTGTGATGTTGTTGGAAGCCCCTACTATGTTGCACCAGAGGTCTTGCGTAAACATTATGGACCTGAATCGGATGTGTGGAGTGCTGGTGTTATTTTGTACATCTTATTAAGTGGAGTGCCACCATTTTGGGCTGAAACTGAGCAGGGGATCTTCAGACAGATTTTGTTAGGAAGACTTGATTTCCAGTCTGAGCCATGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATCGGAATCCAAAAACAAGGCTAACAGCTCATAAAGTACTCTGTCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTCTTGATTCTGCTGTTTTATCACGCTTGAAGCAATTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCAGAGAGGCTCTCCGAGGAAGAAATTGGTGGTCTGAAGGAGTTGTTCAAAATGATTGATGCAGATAACAGTGGAACTATAACATTTGATGAGCTAAAAGAAGGCTTAAAACGAGTAGGCTCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCGGACATTGATAATAATGGGACAATTGACTACGGTGAATTCATTGCTGCTACTGTTCACTTAAATAAGCTGGAGAGAGAGGAAAATCTATTGTCAGCGTTCTCCTATTTTGACAAAGATGGAAGTGGTTACATAACCATTGATGAGATACAACAAGCTTGTAAAGAGTTTGGTTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAACGATGGACAGATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGACGAACCATGACAAGCACACTGAATTTCAGAGATGCTCTGGGAATCATGGGCAATGGGTCCAATTAA 1491 0.446 MSKPNTGTSSAPTKPAWVLPYPTENLREAYTLGRKLGQGQFGTTFLCTHNATGRKYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEQPNVVRIHGTYEDHSSVHLVMELCEGGELFDRIVRKGQYSEREAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVEEDAKLKTTDFGLSVFYKPGETFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRLDFQSEPWPSISDSAKDLIRKMLDRNPKTRLTAHKVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDADNSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDNNGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFRDALGIMGNGSN* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0372 496 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Apr1g0372 496 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0372 496 SUPERFAMILY Protein kinase-like (PK-like) 12 311 IPR011009 -
Apr1g0372 496 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Apr1g0372 496 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Apr1g0372 496 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Apr1g0372 496 Gene3D - 401 495 - -
Apr1g0372 496 PANTHER BNAA09G05220D PROTEIN 16 480 - -
Apr1g0372 496 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Apr1g0372 496 CDD EFh 408 467 IPR002048 GO:0005509
Apr1g0372 496 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Apr1g0372 496 SMART efh_1 371 399 IPR002048 GO:0005509
Apr1g0372 496 SMART efh_1 335 363 IPR002048 GO:0005509
Apr1g0372 496 SMART efh_1 407 435 IPR002048 GO:0005509
Apr1g0372 496 SMART efh_1 441 469 IPR002048 GO:0005509
Apr1g0372 496 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 480 - -
Apr1g0372 496 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Apr1g0372 496 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Apr1g0372 496 Gene3D - 329 400 - -
Apr1g0372 496 ProSiteProfiles EF-hand calcium-binding domain profile. 441 472 IPR002048 GO:0005509
Apr1g0372 496 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Apr1g0372 496 SUPERFAMILY EF-hand 327 467 IPR011992 -
Apr1g0372 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Apr1g0372 496 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Apr1g0372 496 Pfam EF-hand domain pair 406 467 IPR002048 GO:0005509
Apr1g0372 496 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0372 496 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0372 496 CDD STKc_CAMK 30 287 - -
Apr1g0372 496 CDD EFh 336 395 IPR002048 GO:0005509
Apr1g0372 496 Gene3D Transferase(Phosphotransferase) domain 1 117 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0372 Apr-Chr1 4594681 4600614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0372 2 496 EF-hand Containing Proteins AT1G35670 76.553 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr1g0372 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0372 K13412 - gmx:100805961 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0372 1 4594681 4600614 Apr1g0372 1 4594681 4600614 ECH