Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0350 ATGCCTTTTGAAATAATGGAGCAGAGGGGTGTTTCTGCCTCATCCCACTTTTTGGATGAAATTTCATATGCTTCCGAGAATCTCGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTGCAAGGGAAGAGTGAAATGGCGGCATCACCTGGCAGCATTTTGAGTACTTCATCACCCCTTGAAACAAATGCAAAAACAGGCTTACCAATGTCACAGAGTAGTCTATCCGGGGAAATTACAGAAGATGTACGTTTTGGCGGAGAAGCAGGCATTATAGATATGCTAAAGGATTCTGTGGATTCATTCAATTATCATAAAAAATCACGGTCTAAAGTGCTGAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAAGATTGTCACCAATGCTGCATCACGTGAAAGTAGTCTATTCTCAAGCTCGCTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGATTTGTTGTCCGATCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTGTTGAAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGAGTCAATGATGAGTTAGGATGCAGTGCTCATACTGGAACAAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTAGAAGGAGATGAACATCTAATTTCAGGAAAACAAACCACTTGTGTGGATGGAGATCCTGATTGCTTTGGATTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAAGACTCTGAGCTTAAGGCTCTCTTTCAGCAATATGGTGATATCCGAACCATTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGATATCTGGTCTTGATTCATCTGTTTTGAATGATGAACTTAAACAGATTTTTGGGTTTTATGGAGATATTAGAGAAATATATGAATTTCCACAAATGAATCATGTCAAATTCATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAACGGGATCTGCTTTGCTGGGAAGCACATCAAGCTTGAACCTGGCCTTCCCAGGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAATCTGAGTGACAGCTTATCCTTAAGACATAAGGGAATGTCATCTGGATTTATTGCATCTGCTGGCTCCTTGGAAAATGAATATAATCAGGGATTTCATTCTGTGACACGGCCAACTTTGAATGGTTTTATTGACAACTCATTGTTTTGTGCAAATTCTAACATTCTCAAGACTGCAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTGTGAGGCTAGTAATGCTATTGATGCAATGAAATTTGCATCCGTTCCAAGGTTCCAACCTCATTCTTTGCCTGAATATCGTGATAGTTTAGCTAATGGCAGTCCTTTCAGCTTTTCAAGCACCATTAGCATGGCTGCCAATATGGCAACTGGATCAATGGAATCATCTGACATCAGGCACATTCAGGGAATGAGCTCAACTGGGAGCCTGGCAGAATTTAATGCAGGAGGAAATGGGAGTCGGCCCCATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAGCAACCTCCATCAAATGGCATGCTTTGGCAGAAAACGCCATCCTTTGTTAATGGTGCTTGTGCTCCTTGTCTTCCACAGATACCCAGCTTTCCTAGAACACCGCCTCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCTGGTTTTCCTGGTAGCTGGCAGTTGCGTCCTCCTGATTTTTCTTCTCATAACATATTTTCTCATGTTGGTGGGAATGGTACAGAATTGACGTCCAATACTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACTTCCCATGATTTCGATGTCTAAATTTGATTCTACCAATGAACGAATGAGAAATCTCTATCCCCGTAGAAGTGAAGCAAACATTAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACACTTATGATAAAAAATATTCCCAATAAGTATACCTCAAAGATGCTTCTTGCTGCCATAGATGAGCAGTGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCGGGTCAAATTATTCCATTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCTGTACTAGCCTATGCCCGGATTCAAGGAAAATCTGCGCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAATGAAGATAAACGTTGTCGCCCTATTCTCTTCCATACAGATGGGCCAAATGCTGGCGATCCGGAACCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAATCTCGCATTAATGGTAATGAGGAAAATCGCAGCCAAGGGAATCCGTCAACTTTGACAATTGGAGAAGAGTCTGCTAATGGAATAGAATCTTCATTGAGTTCCTCAAGAAACTCTGACTGA 2916 0.4126 MPFEIMEQRGVSASSHFLDEISYASENLGLRKPKSIHDHFLQGKSEMAASPGSILSTSSPLETNAKTGLPMSQSSLSGEITEDVRFGGEAGIIDMLKDSVDSFNYHKKSRSKVLRQPASSSYGLIGNKIVTNAASRESSLFSSSLSEMFSQKLRLLGNDLLSDQPITVGSLPEEEPYKSVEEIEADTIGNLLPDEDDLFSGVNDELGCSAHTGTNDDFEDFDLFSSGGGMELEGDEHLISGKQTTCVDGDPDCFGFSKGKIPFGEQSSRTLFVRNINSSVEDSELKALFQQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISGLDSSVLNDELKQIFGFYGDIREIYEFPQMNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPRIATCMMQQSQKGQDEPDLGHNLSDSLSLRHKGMSSGFIASAGSLENEYNQGFHSVTRPTLNGFIDNSLFCANSNILKTARGASAGKVSGVCEASNAIDAMKFASVPRFQPHSLPEYRDSLANGSPFSFSSTISMAANMATGSMESSDIRHIQGMSSTGSLAEFNAGGNGSRPHHGLYHMWNGSNLHQQPPSNGMLWQKTPSFVNGACAPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDASGFRLGSVGSPGFPGSWQLRPPDFSSHNIFSHVGGNGTELTSNTGQGSPKQLSHVFPGRLPMISMSKFDSTNERMRNLYPRRSEANINNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRINGNEENRSQGNPSTLTIGEESANGIESSLSSSRNSD* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0350 971 SMART rrm1_1 797 875 IPR000504 GO:0003723
Apr1g0350 971 SMART rrm1_1 270 338 IPR000504 GO:0003723
Apr1g0350 971 SMART rrm1_1 355 423 IPR000504 GO:0003723
Apr1g0350 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Apr1g0350 971 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
Apr1g0350 971 CDD RRM1_MEI2_like 268 343 IPR034453 -
Apr1g0350 971 Gene3D - 263 351 IPR012677 -
Apr1g0350 971 Gene3D - 352 450 IPR012677 -
Apr1g0350 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Apr1g0350 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Apr1g0350 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 971 - -
Apr1g0350 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Apr1g0350 971 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 971 - -
Apr1g0350 971 MobiDBLite consensus disorder prediction 929 971 - -
Apr1g0350 971 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Apr1g0350 971 MobiDBLite consensus disorder prediction 937 971 - -
Apr1g0350 971 CDD RRM3_MEI2_like 798 883 IPR034454 -
Apr1g0350 971 Pfam RNA recognition motif 2 795 891 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0350 Apr-Chr1 4303578 4312102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0350 264 420 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 8.31e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0350 - - aprc:113865455 1895.94