Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0346 ATGGAGAGAAGATCACATTCTTCGGAAGAAGGGCAAAAAGAAGAAGACTATAATTTGTTCCCAATCTATTCCGAAAGGTCCCAACAAGACATGTCAGCTATGGTCTCAGCCCTTACACAAGTCATTGGCGGCACCAACAATGACCCACTTGATCAGATGCATGAAGATGCTGTATTAACTTCCACCCACTCTAGCTCTACCCAAAATACTGAACACTCCCAACAACCACCGCAAGATCAAGGTAATGTAAGAAGAAGACACTATAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCGGCAGAGATTCGCGATCCAAAGAAAGCAGCGAGAGTTTGGCTTGGAACTTTTGAAACTGCTGAAGCTGCGGCTCTTGCTTATGATGAAGCTGCACTTAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTTCCTGAAAGAGTTCAAGGCACAGGCGAATTTGGTAATTACCTCACAAATCAACAACATATGCTTTCAAACAGTGGTAAAAATGAACAACCATTATCTAACCCAGTTGCTACACACTTTACTCAAGAAACGTATCAAAGTAATCCCTTTCAATATGCACAACTCATGGGTAGTGCAAGTGGTGGCAACTTCAATCAAGATATGCTTAGTTTTTATGGGAGAGACATGTTTGTTTCTTCTCAGCCACCAGCATCTTCGTCTTCTTCTGGATTATCGCAGCAGCAACAACAAGAGCAGTTTTTGAGATTTTCAATGCAATTCGGAGGCTCTTCTTCTGGTTCTGAGCCTCCTAGGAATTGGAGGGATGGTAGACAATGA 804 0.4316 MERRSHSSEEGQKEEDYNLFPIYSERSQQDMSAMVSALTQVIGGTNNDPLDQMHEDAVLTSTHSSSTQNTEHSQQPPQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGNYLTNQQHMLSNSGKNEQPLSNPVATHFTQETYQSNPFQYAQLMGSASGGNFNQDMLSFYGRDMFVSSQPPASSSSSGLSQQQQQEQFLRFSMQFGGSSSGSEPPRNWRDGRQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0346 267 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Apr1g0346 267 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Apr1g0346 267 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g0346 267 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Apr1g0346 267 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Apr1g0346 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 247 - -
Apr1g0346 267 MobiDBLite consensus disorder prediction 1 24 - -
Apr1g0346 267 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Apr1g0346 267 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Apr1g0346 267 MobiDBLite consensus disorder prediction 221 260 - -
Apr1g0346 267 MobiDBLite consensus disorder prediction 59 91 - -
Apr1g0346 267 PANTHER DNA-BINDING DOMAIN 22 247 IPR044808 GO:0003700|GO:0009873
Apr1g0346 267 MobiDBLite consensus disorder prediction 221 267 - -
Apr1g0346 267 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Apr1g0346 267 MobiDBLite consensus disorder prediction 59 81 - -
Apr1g0346 267 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0346 Apr-Chr1 4246068 4248008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0346 18 160 AP2-EREBP Transcription Factor Family AT5G61890 64.384 1.96e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g0346 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0346 - - gmx:100799190 279.641