Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0345 ATGGACCCCGACGCATTCACCGCTAGCCTATTCAAGTGGGACCCACGCACCGTCCTTCCCACCACGGCCCCCACGCGCCCTCCTCTCCTCGACTACACGGTGGCTCCGCCAGTTTCCCCGGCGGCCGCGGCGTACCACCCGGTGAGGGCGCCGCGGGAACTAGGAGGGTTGGAAGAGCTTTTCCAAGCCTACGGCATAAGGTACTACACGGCGGCGAAGATCGCCGAGCTCGGCTTCACGGTGAGCACGCTGGTGGACATGAAGGACGAGGAACTCGACGACATGATGAACAGCCTCTCCCAAATTTTCCGCTGGGACCTCCTCGTCGGAGAACGTTACGGCATCAAAGCCGCCGTTAGAGCCGAACGACGTCGCGTCGAAGAAGACGACATCAAGCGCCGTAACAACAACCTTCTCTCAAACGACACCACCACCAACGCCCTCGACGCTCTCTCTCAAGAAGGTTTATCGGAGGAGCCAGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTTGTCGCGGCGGAGGAGAGGAGGAAGCAGCAGCAGAGGAGGCGGAGGACGAGGATGAAGGGGAGTGTTCATCACGACGAGAATGAGGAGCTTGAAGATGAGGAAGGAGAAGAGAACGATGAAGGGAACAACAACAGTGGTGGGTGTGAGAGGCAAAGGGAGCACCCATTCATCGTGACGGAGCCAGGGGAGGTTGCACGTGGGAAAAAGAACGGTTTGGATTATCTGTTTCATCTTTACGAGCAGTGCCGTGAGTTCTTGATTCAGGTTCAGGCTATCGCGAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTATTTAGGTACGCGAAGAAGGCTGGAGCTAGCTACATCAACAAGCCGAAGATGCGACACTACGTGCACTGTTACGCATTGCATTGTCTTGACGAAGAGGTATCGAACGAGCTGAGAAGAGCGTTCAAGGAGAGAGGGGAGAACGTGGGAGCGTGGAGGCAAGCGTGTTACAAACCCCTCGTTGCCATCGCAGCGCGTCAAGGTTGGGACATTGATGCCATTTTCAATGCTCATCCTCGTCTTTCCATTTGGTACGTTCCAACAAAGCTCCGTCAACTTTGCCATGCCGAGAGGAACAGCGCCGCCGCTTCAAGCTCCGTCTCCGCCGGCAGCGCCCACCTTCCCTTTTAA 1209 0.574 MDPDAFTASLFKWDPRTVLPTTAPTRPPLLDYTVAPPVSPAAAAYHPVRAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEEDDIKRRNNNLLSNDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVAAEERRKQQQRRRRTRMKGSVHHDENEELEDEEGEENDEGNNNSGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0345 402 MobiDBLite consensus disorder prediction 152 241 - -
Apr1g0345 402 Pfam Floricaula / Leafy protein SAM domain 53 129 IPR035079 -
Apr1g0345 402 Gene3D Protein LEAFY 225 394 IPR038276 -
Apr1g0345 402 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 223 388 IPR035209 GO:0003677
Apr1g0345 402 PANTHER PROTEIN LEAFY 1 402 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0345 Apr-Chr1 4220536 4223227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0345 1 386 Orphan Transcription Factor Family AT5G61850 66.915 4.43e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Apr1g0345 C_LFY_FLO 2.3e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0345 - - gsj:114416001 649.432