Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0341 ATGAATTTTGCAAAACTCAACGACTCGCCCATGTTCCGACAACAGCTCCAGTGCATGGAAGAAAGTTCAGAGTCGTTACGCTCGAGATGTTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGGGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGGGGACCTGTTATGACCAAATTTGCTATTGCTATGAGAGAAATTAGTACATACAAGGAACTTCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGGTTACTGAACATTCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGAAGACGTTTTGACAAAGCATCCCTCGTACATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCTGCTGTTGTAGAAGAGGAAATGCACAATGCAAGAACCGCATTTGAAGAAGCTCGATTCAATTTGGTAGGGGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGCTATTACATGATCTAGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGTTAGAGTACAAAAAACAAGTTCATCATCAAAGTATGATGTCCTTGAATGGCCCTTATACTTCTCCAGGTAAAGATAGAGCTCAAGTGCAACCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCTGTAACAGAATCTGCTGCAAATGGAAAGGTCCAAATCATTCGACAAGGGTATCTTTCAAAACGATCCTCCAACTTAAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGACAGTCGCGGAATGCTTTACTACTACCGTAAACCCTGGAATGGGTTACATGTAACATCTTTACAAAAGACTTGTGCTGCTGACAATAGTGCTGGGATTCTGAGTCGATTGCTTTCTTCACATAACCATGGAGTTGTCCCTGATGAAAAATCCGTAGCACGTCATATAGTGAACCTATTGATATCAACAATCAAGATTGATGCTGAACAATCAGATTTAAGGTTTTGCTTCAGGATTATTTCACCAACAAAGAGTTATACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTGTTGAGTGTACATACACTGGATAAGGTACATACTTCTTCAGATGACTCAGAAAGCGGCGATTGTTACTCTGCTAGCAAGATTGATTCCTTACAAAGTTCTCCAGATGATGATCATGCATCAAGTGGAGATTCTGCATCTGAAACCTTGCAAAAGACCAAGAACATTATAAAAATTGGAAAGCCAATTGATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAACCCTGACCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCTGGTGTTCACCGTAACCTTGGTGTACATGTATCAAAAGCTTTCTTTTTTTCACTCCTCGTACGTGCAATTAAGGTGGAGTTAAAACATTTTTTTCCCCAGGTAAGATCGCTGACACTTGATGTGAAAGTATGGGATTCCTCTGTCTTAACCATGTTTCAGTCACTAGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTGCATTCAACAAGTACTTCACAAACTGATGACACTCCAGACGGTTCATCCAAGGTACCCAAAAAGTTATTTCACGCAAGAAAACCAGCACATGATGATCCTATTTCACTGAAGGAGAGATTCATTTTTGCAAAGTATTCTGAGAAAATATTTGTTCGGCGGGTGACAAAAAACAACCGTCTCCTTTCGGCAGCACAACAGGTAGCAGCAAGCATCTGTGCCAATGACAAGAAAGCAGTGTACCGACGCATTGTCAAGTCAGATGTCGATGTCAATCTTGTTAGTGGGGAAGCATTATATGGCTTTTCTTCCAACATGCCTTCTTCAACTAATTCGAACATATCATCTCAAAGTAAGATTGAAATAATGGAAGACTTCCAAGATGGTTCTACTGCGCTTCACCTGGCATGCCTAACTGGTGATGCTGCAATGGTAGAACTGCTCCTACAACATGGCGCAGATGTAAATGCTATTGATTCAAGAGGTCGAACACCACTGCATTACTGCATTATGAGGGGAAAGAATGCAGCTGCAAAAGTGCTTATTACAAGGGGTGCCAATCCAGCTGCCGAAGACGAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAACCTGACACTATTAGCAAAGGCATTCTTGCTCTCTTAAGCAGATGA 2439 0.4153 MNFAKLNDSPMFRQQLQCMEESSESLRSRCWKFYKGCRKYTEGLGGAYDGDIAFASALESFGGGHNDPLFVTLGGPVMTKFAIAMREISTYKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASLVHDQAREKFMSLRKSTRMDIAAVVEEEMHNARTAFEEARFNLVGALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHDLEPFIIEVLAYAQKARESYNEEQISLCERMLEYKKQVHHQSMMSLNGPYTSPGKDRAQVQPFSRISNEVVDAVTESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNGLHVTSLQKTCAADNSAGILSRLLSSHNHGVVPDEKSVARHIVNLLISTIKIDAEQSDLRFCFRIISPTKSYTLQAENALDQMDWMEKITGVIASLLSVHTLDKVHTSSDDSESGDCYSASKIDSLQSSPDDDHASSGDSASETLQKTKNIIKIGKPIDVLRKVSGNDKCADCGNPDPDWASLNLGILICIECSGVHRNLGVHVSKAFFFSLLVRAIKVELKHFFPQVRSLTLDVKVWDSSVLTMFQSLGNLFANSVWEELLHSTSTSQTDDTPDGSSKVPKKLFHARKPAHDDPISLKERFIFAKYSEKIFVRRVTKNNRLLSAAQQVAASICANDKKAVYRRIVKSDVDVNLVSGEALYGFSSNMPSSTNSNISSQSKIEIMEDFQDGSTALHLACLTGDAAMVELLLQHGADVNAIDSRGRTPLHYCIMRGKNAAAKVLITRGANPAAEDEEGNTPLKLASEPDTISKGILALLSR* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0341 812 Pfam Ankyrin repeats (3 copies) 718 785 IPR002110 GO:0005515
Apr1g0341 812 PANTHER CENTAURIN/ARF 1 811 IPR045258 GO:0005096
Apr1g0341 812 Pfam PH domain 296 426 IPR001849 -
Apr1g0341 812 CDD BAR_SFC_plant 15 215 IPR035670 -
Apr1g0341 812 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Apr1g0341 812 SMART PH_update 295 429 IPR001849 -
Apr1g0341 812 CDD PH_ACAP 297 431 - -
Apr1g0341 812 Gene3D - 287 441 IPR011993 -
Apr1g0341 812 Gene3D Arf GTPase activating protein 468 654 IPR038508 -
Apr1g0341 812 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Apr1g0341 812 Gene3D - 698 804 IPR036770 -
Apr1g0341 812 Pfam Putative GTPase activating protein for Arf 492 539 IPR001164 GO:0005096
Apr1g0341 812 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Apr1g0341 812 SUPERFAMILY Ankyrin repeat 674 798 IPR036770 -
Apr1g0341 812 Pfam BAR domain of APPL family 6 233 - -
Apr1g0341 812 ProSiteProfiles ARF GTPase-activating proteins domain profile. 488 653 IPR001164 GO:0005096
Apr1g0341 812 Coils Coil 118 138 - -
Apr1g0341 812 ProSiteProfiles Ankyrin repeat region circular profile. 755 787 - -
Apr1g0341 812 SUPERFAMILY ArfGap/RecO-like zinc finger 489 648 IPR037278 -
Apr1g0341 812 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Apr1g0341 812 ProSiteProfiles PH domain profile. 294 427 IPR001849 -
Apr1g0341 812 MobiDBLite consensus disorder prediction 457 476 - -
Apr1g0341 812 SUPERFAMILY PH domain-like 203 426 - -
Apr1g0341 812 PRINTS HIV Rev interacting protein signature 500 519 IPR001164 GO:0005096
Apr1g0341 812 PRINTS HIV Rev interacting protein signature 519 536 IPR001164 GO:0005096
Apr1g0341 812 PRINTS HIV Rev interacting protein signature 563 584 IPR001164 GO:0005096
Apr1g0341 812 SMART ANK_2a 755 784 IPR002110 GO:0005515
Apr1g0341 812 SMART ANK_2a 722 751 IPR002110 GO:0005515
Apr1g0341 812 SMART arf_gap_3 488 653 IPR001164 GO:0005096
Apr1g0341 812 ProSiteProfiles Ankyrin repeat profile. 755 787 IPR002110 GO:0005515
Apr1g0341 812 CDD ArfGap 491 640 - -
Apr1g0341 812 ProSiteProfiles Ankyrin repeat region circular profile. 722 753 - -
Apr1g0341 812 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0341 Apr-Chr1 4149129 4160324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0341 487 650 C2H2 Transcription Factor Family AT4G21160 35.057 5.36e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0341 K12489 - gmx:100797073 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0341 1 4149129 4160324 Apr2g1128 2 17527888 17541669 ECH
Apr1g0341 1 4149129 4160324 Apr1g0341 1 4149129 4160324 ECH
Apr2g1128 2 17527888 17541669 Apr1g0341 1 4149129 4160324 PCT