Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0340 ATGGCATCATCGGAGGTGACGATGAACGGAAATTGCTTGAACCATAACGATGCTAGTAGGAACGCTGCTACAGAGACTCAGAATGCTCATTCGCCGACCACCGCGAAAGACGCGGAAGTTGCACTTTTCAGGGAACTGTGGCACGCCTGTGCCGGTCCTCTTGTAACTGTTCCACGGGAAGACGAACGCGTCTTTTATTTTCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACAAATCAGGTGGCGGACCAACATATGCCGGTTTACGATCTCCCACCGAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCGGACACGGATGAAGTGTTTGCCCAGGTCACCTTACTTCCCGAGTCAAATCAAAATGAGAATGACATAGAGAAGGAGCCTCCGCCACCTCCGCCGCCGCGATTTCACGTTCATTCATTCTGTAAAACACTGACGGCCTCGGATACCAGTACCCATGGTGGGTTTTCCGTACTGAGACGGCATGCCGATGAATGTCTTCCTCCTCTGGACATGACGAAGCAGCCACCCACCCAGGAATTGGTGGCTAAGGATCTGCACAGTAATGAGTGGCGATTTAGACATATCTTTCGGGGTCAACCCCGTAGGCACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTCGCTGGGGATGCATTTATATTTCTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGAGCAATGAGACATCAGGGGAACGTTCCATCCTCAGTTATATCTAGCCATAGTATGCACCTTGGGGTCCTTGCAACAGCTTGGCATGCCATCAGGACGGGGACCATTTTCACTGTTTATTACAAGCCGAGGACCAGTCCTGCTGAATTTATTGTTCCGTACAATCAATATATGGAGTCCCTCAAAAATAATTATACCATAGGGATGCGATTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTCACTGGTACCATTGTTGGAATAGAAGATGCTGATCCCAAAAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACGTCCAACACTCCTCGTCCAGAGAGAGTTTCCCCTTGGAAAATAGAGCCGGCTATTGCTCCTCCAGCTTTGAATCCCCTTTCAATGCCCAGGCCTAAAAGGCCTCGGGCTAATGCTGTTCCATCATCCCCAGATTCCTCCGTTCTTACTAGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACCAACAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCACGACCTTGAGAGGCAATTTTGCTGAAAGCAATGACTCTGATACTCCTGAGAAGTCTGTTGTTTGGCCACCTGCAGTAGATGATGAAAAGATTGATGTTGTTTCTACTTCAAGGAGGTATGGTTCAGGGAGCTGGATGTCAATGGGGAGGAATGAGCCAACATATTCAGATCTTCTTTCGGGCTTTGGGGCCAGTGGAGATCCTTCTCATTCGGCCTTGATTGATCAAATGACTACTGTAGCTTTTCCTGCTAGAAAGCAATCTTGGACTGTAATGTCCTCTGGTCTCTGTCTGAACATCTTGGACCCTAATACAAAAGGTTCTGCACATGGTGGTGATACAACTTACCAAGCTAGAGGGAATTTGAAGTACAGTGCATTTGGTGAATACCCTGCACTGCATGGTCATAAAGTTGAGCATTCGCATGGAAACTTGATGCCTCCCCCACCCACACCCCTAACTCAATATCAGAGTCCTCACTCAATAGAGCTTATGTCAAAACCAGTGTCAGTGAAAACTTATGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGTTATTTGGCATCTCCCTTATCAGTAGCCCTGTAGTACCTGAGCCTTCTGTTTCACAAAGAAATGTGAGTGATCCAGCTGGTCAAATGCCTCTTACATCACACCAACAAAGAACATCTGAAAATGATCAAAAGTCAGATCACTCAAAGGGCTCGAAACTAGCAGATGGTCTAGTTGTTGATGACCATGACAAGCCATTACAGACTTCTCAGCTGCATATGAAAGATGTTCAAGCCAAACCTCTTGGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCACTTGGTAGGTCAGTGGACCTTGCAAAGTTCAGTGGCTACAAAGAATTGGTTGATGAATTGGATGAGCTGTTTGACTTTGAAGGAAAATTAAAGTCAACTGAAAAAGATTGGCTTATTGTCTACACTGACAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTCTGTGGCATGGTTCGGAAAATTTTTATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCAGGTACCTTGGGTTCAAAAAATGAAGAGAACCAGTCGGCTAGTGAAGGTGCAGATGCTCAAGACATTAAATGTCAGCCACAACAGGAGTTAAACTCAGATAATGGCCTTGACGCCTGA 2511 0.4671 MASSEVTMNGNCLNHNDASRNAATETQNAHSPTTAKDAEVALFRELWHACAGPLVTVPREDERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPESNQNENDIEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHSNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRHQGNVPSSVISSHSMHLGVLATAWHAIRTGTIFTVYYKPRTSPAEFIVPYNQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPAIAPPALNPLSMPRPKRPRANAVPSSPDSSVLTREASSKVSIDPSPTNGFPRVLQGQEFTTLRGNFAESNDSDTPEKSVVWPPAVDDEKIDVVSTSRRYGSGSWMSMGRNEPTYSDLLSGFGASGDPSHSALIDQMTTVAFPARKQSWTVMSSGLCLNILDPNTKGSAHGGDTTYQARGNLKYSAFGEYPALHGHKVEHSHGNLMPPPPTPLTQYQSPHSIELMSKPVSVKTYEAVKPKDGDCKLFGISLISSPVVPEPSVSQRNVSDPAGQMPLTSHQQRTSENDQKSDHSKGSKLADGLVVDDHDKPLQTSQLHMKDVQAKPLGGSARSCTKVHKKGIALGRSVDLAKFSGYKELVDELDELFDFEGKLKSTEKDWLIVYTDNEGDMMLVGDDPWQEFCGMVRKIFIYPKEEIQKMSPGTLGSKNEENQSASEGADAQDIKCQPQQELNSDNGLDA* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0340 836 MobiDBLite consensus disorder prediction 382 430 - -
Apr1g0340 836 Gene3D - 311 381 - -
Apr1g0340 836 MobiDBLite consensus disorder prediction 798 816 - -
Apr1g0340 836 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g0340 836 Gene3D - 705 797 - -
Apr1g0340 836 SUPERFAMILY DNA-binding pseudobarrel domain 144 277 IPR015300 -
Apr1g0340 836 CDD B3_DNA 146 248 IPR003340 GO:0003677
Apr1g0340 836 MobiDBLite consensus disorder prediction 635 660 - -
Apr1g0340 836 ProSiteProfiles PB1 domain profile. 708 792 IPR000270 GO:0005515
Apr1g0340 836 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Apr1g0340 836 SUPERFAMILY CAD & PB1 domains 711 785 - -
Apr1g0340 836 Gene3D - 145 250 IPR015300 -
Apr1g0340 836 Pfam AUX/IAA family 702 794 IPR033389 -
Apr1g0340 836 PANTHER AUXIN RESPONSE FACTOR 2 27 815 - -
Apr1g0340 836 MobiDBLite consensus disorder prediction 401 430 - -
Apr1g0340 836 MobiDBLite consensus disorder prediction 635 679 - -
Apr1g0340 836 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr1g0340 836 MobiDBLite consensus disorder prediction 796 836 - -
Apr1g0340 836 SMART B3_2 148 250 IPR003340 GO:0003677
Apr1g0340 836 MobiDBLite consensus disorder prediction 661 679 - -
Apr1g0340 836 MobiDBLite consensus disorder prediction 822 836 - -
Apr1g0340 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 815 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr1g0340 836 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0340 Apr-Chr1 4117773 4123706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0340 1 830 B3 DNA Binding Superfamily AT5G62000 62.586 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr1g0340 AUX_IAA 4.1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0340 - - gmx:100803498 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0340 1 4117773 4123706 Apr1g0340 1 4117773 4123706 ECH
Apr2g1129 2 17559730 17565164 Apr1g0340 1 4117773 4123706 PCT
Apr1g0340 1 4117773 4123706 Apr10g1496 10 27397692 27401133 PCT