Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0339 ATGTCTAGAATAAACCCCAGCGTTGCGTGGATGGACGAGAGAGAAGACCAAAACTCTGCTTCAGCTTCATGGGCCAGAACCTCCAGGCCCAGCAACATCATAACCACCGACAGAAACACAAACACAAACATTGGTTTTGTCGAAAACACTAACAGAGACGACTTGGGATCTATCTGTGCCTTCAAACCCATGTTGGAAGTGGACGAGGAATGGTACATGACCAACCACAACCACCATCAAGACATGACCTTTTCCCCAAACTTCGCTGACCCAGATAACCTTTTGCTTCACGCTGTTGACTCTTCATCCTCTTGCTCTCCCTCTTCCTCCGTCTTCAACAACCTCGACCCTTCACCCTCTCAAGTTCAGTACTTTCTCCCTTCCAACCCCAAACCCACCACTCTCTCTTCTCTGCTCAACCCTTTTGACATGGCCTGTGAAGTGGGGTTTCTTGATCCTCAAGCTTCGTCCTCTTTGCCACTTCTCAGTAGAGCTTCTTCCCTTCTGGGTAACCAGTTAGCGCTTCCTAGCATGAACTCAGAAACACAGTTAACAACAACACCTCAAAGCAGCACCGCCTTTGCGGGGTTTCAGAACTTGGAAGAAGGTTCTGCTTCGAAGCCTCTATTTCTTAACAGGTCAAAGATTTTGAGGCCCCTTGAATCGTTACCTCCTTCTGGGGCACAGCCGACGTTGTTTCAGAAGAGAGCAGCACTTAGGAAAAATATGGGATCAGAAGGTGGAAGAGGGAAGTGTGAAGTGGGGGAAGGGAGTGACAAGAAGAGAAAAGAGGAGGTGGAAGATGTGAGTTTTGATGGGTCAGGGTTGAACTATGATTCTGATGACTTGACTGAGAGTAATTATAATAAGGTTGAAGAGATTAGTGGCAAGAATGGTGGAAACAGCTCCAATGGAAACAGCACTGTCACGGGTTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCTGAACGACGCCGTAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAATGAGTTGGAGTCAACACCTGCTGGTTCTTCTCTTACACCTGCCTCAAGCTTCCATCCTTTGACACCTACTCCTCCGGCACTTCCGAGCCGAATCAAAGAAGAACTATGCCCCAGTTCATTGCCAAGCCCCAGTGGCCAACCTGCCAGGGTTGAGGTTCGTTTGCGGGAAGGAAGGGCTGTTAACATACACATGTTTTGTGCCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGTTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGTTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCGGCAGGCTTCAATGGCATGATCTAA 1536 0.4746 MSRINPSVAWMDEREDQNSASASWARTSRPSNIITTDRNTNTNIGFVENTNRDDLGSICAFKPMLEVDEEWYMTNHNHHQDMTFSPNFADPDNLLLHAVDSSSSCSPSSSVFNNLDPSPSQVQYFLPSNPKPTTLSSLLNPFDMACEVGFLDPQASSSLPLLSRASSLLGNQLALPSMNSETQLTTTPQSSTAFAGFQNLEEGSASKPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSEGGRGKCEVGEGSDKKRKEEVEDVSFDGSGLNYDSDDLTESNYNKVEEISGKNGGNSSNGNSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPPALPSRIKEELCPSSLPSPSGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRVLDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFNGMI* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0339 511 MobiDBLite consensus disorder prediction 252 270 - -
Apr1g0339 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Apr1g0339 511 MobiDBLite consensus disorder prediction 12 36 - -
Apr1g0339 511 Gene3D - 314 384 IPR036638 GO:0046983
Apr1g0339 511 CDD ACT_UUR-ACR-like 440 500 - -
Apr1g0339 511 SMART finulus 326 375 IPR011598 GO:0046983
Apr1g0339 511 Coils Coil 359 383 - -
Apr1g0339 511 MobiDBLite consensus disorder prediction 242 324 - -
Apr1g0339 511 MobiDBLite consensus disorder prediction 1 36 - -
Apr1g0339 511 CDD bHLH_AtAMS_like 323 388 - -
Apr1g0339 511 Pfam Helix-loop-helix DNA-binding domain 327 369 IPR011598 GO:0046983
Apr1g0339 511 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 100 511 - -
Apr1g0339 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 387 IPR036638 GO:0046983
Apr1g0339 511 MobiDBLite consensus disorder prediction 277 313 - -
Apr1g0339 511 PANTHER BHLH TRANSCRIPTIONAL FACTOR 100 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0339 Apr-Chr1 4114193 4117834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0339 61 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.813 1.49e-124 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0339 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0339 - - vra:106778861 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0339 1 4114193 4117834 Apr2g1130 2 17565435 17569397 ECH
Apr1g0339 1 4114193 4117834 Apr1g0339 1 4114193 4117834 ECH
Apr2g1130 2 17565435 17569397 Apr1g0339 1 4114193 4117834 PCT