Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0333 ATGGCAGCTTTTTCATACCAATACCACCCTTTCCTTGTTGACCCATCATTCTTGCCCACTGCTTCTCCTCCTATTACTGCTACTCAGTTTCCACTTCATCAAGAAACATCTTTTAATGTCACAAACCAAGACACTAGCTGTGTTGACCAAAGTTCCAAGGTTTCCGTCAGTGACAATGAGCCTTCTGTCACAAAAAATAACCTCAGTCCTCAGTCCTCCATGGGAGTGGATAAGCTTGAAACTGGTGAACAAGTCACTCAAAAGGTCACTCCTATGGACAAGAAAAGGAGAACCAGAACTGGGTCTTCCTTGAGTAACCCTCAATCCAAGGATACTGCAGTAGAAGGGAAAAACAAGAAACCAAGGAAGAGCAATGGAGAGGTGAAAGAAGAGGAGAAGCGAAAAGGTGAGAAGAAGGATCAGAGAAAAGAGAAAATCAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGGAAGGCCCTTATGTTGGATGAAATAATCAACTATGTTCAGTCTTTACAAAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACATGACAACGGACCTAGACGTTCTCTTGGTTAGACCAGAGAAACTAAATAGCATTGCATCACCATCACCATCACCGTCACCACTACCATCTGTGTCACATTGCAACAGCCCCAACCAAGGCACAACTTTTGCTGACACAACCACCATGACCCCCACCAACATCTTCCACACTGTTGCTAGTGACTACCTTTTGGACAATTCAGCTTCGTTTTTTCTTCAAGGGCAGAGATCAAATGTCTTCTCTGAGGATACCGGTAGTCATTTCTGGGACGTAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCTTTTCATTAA 939 0.4366 MAAFSYQYHPFLVDPSFLPTASPPITATQFPLHQETSFNVTNQDTSCVDQSSKVSVSDNEPSVTKNNLSPQSSMGVDKLETGEQVTQKVTPMDKKRRTRTGSSLSNPQSKDTAVEGKNKKPRKSNGEVKEEEKRKGEKKDQRKEKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDMTTDLDVLLVRPEKLNSIASPSPSPSPLPSVSHCNSPNQGTTFADTTTMTPTNIFHTVASDYLLDNSASFFLQGQRSNVFSEDTGSHFWDVEDQRQKFLHPYGFSNNLCSFH* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0333 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Apr1g0333 312 MobiDBLite consensus disorder prediction 49 88 - -
Apr1g0333 312 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 143 IPR024097 GO:0006355
Apr1g0333 312 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 312 IPR024097 GO:0006355
Apr1g0333 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 197 IPR036638 GO:0046983
Apr1g0333 312 SMART finulus 134 186 IPR011598 GO:0046983
Apr1g0333 312 MobiDBLite consensus disorder prediction 113 146 - -
Apr1g0333 312 MobiDBLite consensus disorder prediction 49 146 - -
Apr1g0333 312 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 143 - -
Apr1g0333 312 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 142 312 - -
Apr1g0333 312 Gene3D - 127 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0333 Apr-Chr1 4022037 4024923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0333 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 38.189 1.67e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0333 - - gmx:100806696 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0333 1 4022037 4024923 Apr1g0333 1 4022037 4024923 ECH