Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0331 ATGAAACCCCAAACGTGCGAAGACGCGAGTGTATGCACGCTCCAAATCCTTGACTCTGGAAACACTATTATTGTACTTAACCCATTGAGCCCTGAATCAGAGTGGAAAGCAAAAAGAGGGAAGATGAAAGAATCAGCGGAACCAGAGCCTATCAGTGTTTCCCTCCACCTCCTGTCTAACCTCTTGGACTCGGAAATCCCGACTGTCCAAAACTTCAAAGGAAAGTGGTCACTCGCGCGAGTCAAACTCAGCCATCTCCAAACTCACCTCACCGATTTCTCCGCCGAGTTCCCCAATGCCTCCACCTCCAACCCTCTCTCCCTCCACCTACTCCACTCCATCACTCAAACCCTAAACGACGCCGTTTCCATCGCCCAACACTGCCAATCCCCACACTTACCCCACGGCAAGCTCAAAACCCAGAGCGACCTCGACTCCCTCCTCGCCACCCTCCATCGCCACGTCACCGACTGCGACATCCTCTTCCGAAGTGGCCTCCTCCTCGAAAACGCCGCCGTTTCTACTTCCTCCAAACGGGAAGCCCTTCGATCCGCATCTCGAAGCTTAATCACCCGTTTGCAGATCGGGTCACCCGAGTCCAAATCCTCCGCTATGGACTCCTTGTTGGGCCTTCTCCACGAAGACGACAAAAACGTCACCATCGCCGTGGCCCAGGGAGTTGTTCCCGTCCTCGTCCGCCTACTGGATTCCTCCACCGACATGAAGGAAAAAACTGTCGCCGCGATTTCCAGAGTATCCACCGTCGAAAGCGGCAAAAACGTTCTAATCGCCGAGGGTTTGTTTCTTCTCAACCACTTGCTTCGGATTCTCGACTCCGGAAGTGGGTTCGCCATAGAGAAAGCTTGCATCGCGCTTCAAGCGCTGAGTTTCACCAAGGAGAACGCAAGGGCCATTGGTTCAAGAGGTGGAATCTCGTCGCTGTTGGAGATTTGCCAGGCTGGCACTCCTGGTTCCCAAGCTTCTGCCGCCGCGGTTTTGAGGAACCTCGCCGCGTTCGCCGAAATCAGGGACAATTTCGTGGAGGAGAACGCGGTGGTTGTTCTTCTTGGTTTGGCTTCTTCCGGAACGGCTTTGGCTCGGGAAAACGCGATTGGGTGTTTGGCGAATTTGATTTCGGAGGAGGAGAGTTTGAGGGTTTCGGTGGTGAAGGAAGGTGGGGTTGAGTGTTTGAGGAATTTCTGGGACTCGGGTCCACCGGTTCCGAGTCTTGAGGCTGCGGTGGTGATGTTGAAGCACTTGGCTTCGAGTGGTCCAATATGTGAGGTTCTGGTTGGTGAAGGGTTTGTTGAGAGGGTGTTGGGAGTGCTGAATTGTGAGGTGCTGGCGGTGAGGATTGCCGCGGCGAGAGGGGTTTATGCGTTGGGGTTGAACAGTGGAAAGGCGAGGAAGGAGATGGGGGAGTGTGGGTGCGTTGTTCCTTTGATTAAGATGTTGGATGGGAAAGGCGTGGAAGAGAAAGAAGCTTCTGCGATGGCATTGTCGGTGCTGCTGATGCACGCAGGGAATCGGAGGGTTTTCCGTAAGGATGAGAGGGGGATTGTGAGTGCGGTTCATCTTTTGAACCCTTCGTTGCAGGGTTTGGATAAGAAGTACCCTGTTTCTTTGCTTGCGGCGCTCGTGCATTCCAAGAGTTGTAGGAAGCAAATGGTGGCTGCGGGGGCCTGTGTTCATACGCAGAAGCTTGCTGAAATGGATGTTCCTGGGTCCAAGAAGCTCTTGGAGAGCCTTGGGCGTGGTAAGATATGGGGAGTTTTTGCAAGACCTTAG 1788 0.5386 MKPQTCEDASVCTLQILDSGNTIIVLNPLSPESEWKAKRGKMKESAEPEPISVSLHLLSNLLDSEIPTVQNFKGKWSLARVKLSHLQTHLTDFSAEFPNASTSNPLSLHLLHSITQTLNDAVSIAQHCQSPHLPHGKLKTQSDLDSLLATLHRHVTDCDILFRSGLLLENAAVSTSSKREALRSASRSLITRLQIGSPESKSSAMDSLLGLLHEDDKNVTIAVAQGVVPVLVRLLDSSTDMKEKTVAAISRVSTVESGKNVLIAEGLFLLNHLLRILDSGSGFAIEKACIALQALSFTKENARAIGSRGGISSLLEICQAGTPGSQASAAAVLRNLAAFAEIRDNFVEENAVVVLLGLASSGTALARENAIGCLANLISEEESLRVSVVKEGGVECLRNFWDSGPPVPSLEAAVVMLKHLASSGPICEVLVGEGFVERVLGVLNCEVLAVRIAAARGVYALGLNSGKARKEMGECGCVVPLIKMLDGKGVEEKEASAMALSVLLMHAGNRRVFRKDERGIVSAVHLLNPSLQGLDKKYPVSLLAALVHSKSCRKQMVAAGACVHTQKLAEMDVPGSKKLLESLGRGKIWGVFARP* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0331 595 SMART arm_5 298 338 IPR000225 GO:0005515
Apr1g0331 595 SMART arm_5 380 422 IPR000225 GO:0005515
Apr1g0331 595 SMART arm_5 339 379 IPR000225 GO:0005515
Apr1g0331 595 SMART arm_5 215 254 IPR000225 GO:0005515
Apr1g0331 595 SMART arm_5 464 505 IPR000225 GO:0005515
Apr1g0331 595 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 56 595 - -
Apr1g0331 595 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 267 IPR000225 GO:0005515
Apr1g0331 595 SUPERFAMILY ARM repeat 188 528 IPR016024 -
Apr1g0331 595 Gene3D - 405 571 IPR011989 -
Apr1g0331 595 PANTHER BNAC03G16340D PROTEIN 56 595 - -
Apr1g0331 595 Gene3D - 184 404 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0331 Apr-Chr1 3981855 3984051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0331 234 500 U-box Gene Family AT2G23140 25.651 2.57e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0331 - - pvu:PHAVU_009G163700g 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0331 1 3981855 3984051 Apr1g0331 1 3981855 3984051 ECH