Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0329 ATGGGTTGCGTGCTTGGGACGCCGGGCGATGCCGGAGCTCAGCGACATCGCCGGAGCGGAAAGCGTAACGTCGATGCTGACGAAGGTAATAATGCCGTTAGGGTTCGAGAGAGGGATAGAAATCGTCACACCGGCGATTTTCCGGGAACTCTTCCGGCGCCGGAGCGGCGGAAACCTAGACTCGATCCGTGCGCGGTGACTCAACAGGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGCGAGGCAATCGGCGATTGGACTCCTCGTCGCGCGAACACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACATATAGCAATGTATACAAGGCTAGAGACCTTGTTACGGGGAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAGGGTTTGGTTACTTCCAGAATGTCTTGCAGTCTTTACTTGGTGTTTGAGTACATGGAGCATGATCTTGCAGGGCTTGCAGCTGGCCAGGGTGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTGTGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGAGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTCAAAATTGCAGATTTTGGACTGGCAACCTTCTATGATCCTAAGCAAAAGCAGGCGATGACAAGCAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTGCTTCTTGGGGCTACATTTTATGGTGTTGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGTACAGAGGTTGAACAACTGCACAAAATATTTAAATTGTGTGGCTCTCCATCTGAGGAATATTGGAGGAAGTATAAATTGCCCAATGCTACAATCTTTAAGCCCCAACAGCCATATAAACGCTGCATTTCCGAAACATTCAAGGATTTTCCTCCATCTTCACTACCCCTAACTGAAACTCTTCTTGCAATAGATCCTGATGACCGTGGCACTGCCTCAGCTGCACTAAATAGTGAATTCTTTACCACAGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAATGGAAAAGCTAGTGCAATTGATGGTGCCAAAAAAGCCAGAGCACGTGAGCGCAGCCGAGCCATTCCAGCCCCTGAAGCCAATGCAGAAATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACTCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCCCCTCCTCATCAAGATGGAGCTGTTGGATATCCACAGGATGCATCAAATAAAGGGCCTGTTTCATTTGGCGCTCCGGACACTTCCTTTGGTTCTGGGATATTCAATTCAAAACCATCTGGACCTGTAAGAAGTCATGGTGGTGCAGGACTTTACAGAGGGACCAAAACCAAAAAAGAAGAATCTCAGATGGCGTCATCATGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTATTATTTAGGAACAAATAA 1674 0.4707 MGCVLGTPGDAGAQRHRRSGKRNVDADEGNNAVRVRERDRNRHTGDFPGTLPAPERRKPRLDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFVKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKQAMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYKLPNATIFKPQQPYKRCISETFKDFPPSSLPLTETLLAIDPDDRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKASAIDGAKKARARERSRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTSFGSGIFNSKPSGPVRSHGGAGLYRGTKTKKEESQMASSWKFMRPFKPSTVGLSMDLLFRNK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0329 557 MobiDBLite consensus disorder prediction 423 437 - -
Apr1g0329 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Apr1g0329 557 MobiDBLite consensus disorder prediction 14 45 - -
Apr1g0329 557 MobiDBLite consensus disorder prediction 460 525 - -
Apr1g0329 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Apr1g0329 557 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 66 537 - -
Apr1g0329 557 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Apr1g0329 557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Apr1g0329 557 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0329 557 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0329 557 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0329 557 MobiDBLite consensus disorder prediction 416 444 - -
Apr1g0329 557 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Apr1g0329 557 CDD STKc_CDK9_like 94 378 - -
Apr1g0329 557 MobiDBLite consensus disorder prediction 1 59 - -
Apr1g0329 557 PANTHER CELL DIVISION PROTEIN KINASE 66 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0329 Apr-Chr1 3959250 3963781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0329 86 412 Core Cell Cycle Gene Families AT5G10270 51.603 1.02e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr1g0329 Pkinase 9.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0329 K08819 - gmx:100807756 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0329 1 3959250 3963781 Apr1g0329 1 3959250 3963781 ECH