Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0326 ATGGAAAAGCTAAATTTTATTAAGAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTCAGTACTTGAAATGTAAAATCTTCTCGAGCCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTCAGCAAATATGATCCTTGGGATTTGCCAGGAAATTGTGACGAGGAAGAGAGGTACTTTTTCAGCTCGAAGGAAGCAAAGTATCGAAACGGCAATCGCATGAACCGAACAACCAACTCTGGCTATTGGAAGGCAACAGGATCAGACAAAAAAATTTCTTCGTCAATAAGTAATGGTACTGAGGGGGTGAGAAAGACTCTCGTATTTTATCATGGGAAACCTCCACGTGGCACTCGCACTCATTGGGTCATGCATGAATATCGCCTCGTCAGTGTAGAAACTACTACTTCCAATTCTTCCCAGAACTATGTAAACGAGATAGGGGATTGGGTTCTGTGTCGCATATTCATGAAGAAAAGAAGTATAGAAAGTGACGAGAACTCTACATCACCCATGCTGAATAAGAACAATAACACCGTGAGAAATAATGTTGAAGTGGCTCAACCAAGATTCTTTGATTTTATGAGCGTACATAACTCAGTTCCTGCTCCTATACATTCTTCTACGTCCTCATCTTGTTCAAGTTCCAATTACTTCGTAGAAGGCTCTTCATCTGACCACGAAGAAACAAGCGGCTATGCTCATTTTTAA 741 0.4103 MEKLNFIKNGVSKLPPGFRFQPTDEELVFQYLKCKIFSSQLPASIIPEINVSKYDPWDLPGNCDEEERYFFSSKEAKYRNGNRMNRTTNSGYWKATGSDKKISSSISNGTEGVRKTLVFYHGKPPRGTRTHWVMHEYRLVSVETTTSNSSQNYVNEIGDWVLCRIFMKKRSIESDENSTSPMLNKNNNTVRNNVEVAQPRFFDFMSVHNSVPAPIHSSTSSSCSSSNYFVEGSSSDHEETSGYAHF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0326 246 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Apr1g0326 246 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Apr1g0326 246 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Apr1g0326 246 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Apr1g0326 246 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 246 - -
Apr1g0326 246 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0326 Apr-Chr1 3924418 3925850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0326 1 241 NAC Transcription Factor Family AT5G13180 50.000 8.12e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0326 NAM 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0326 - - aprc:113868555 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0326 1 3924418 3925850 Apr2g1144 2 17699982 17701408 ECH
Apr4g1577 4 17406467 17407863 Apr1g0326 1 3924418 3925850 ECH
Apr4g2807 4 36595722 36624920 Apr1g0326 1 3924418 3925850 ECH
Apr1g0326 1 3924418 3925850 Apr1g0326 1 3924418 3925850 ECH