LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0309	ATGGAGAAACACCAAGTGGAATTTCCTACCTCATCATCTACATCATTGGCTGCTTATAATTCTAATATGGTTCATGTTGAGAAAGAAGAGGTTTTAAGAACTCAAGGGAAGGCAATATCAGCGCAGAAAGAAGGTGACAAACAAGAGATCAAGCAGCACAGATACGCATTTCAAACAAGGAGTCCGGTTGATGTACTTGACGATGGGTACCAGTGGAGGAAATATGGGAAAAAGATAGTGAAAAGCAATAAATTCCCAAGAAGTTACTACAGATGCTCTCATCGGGGTTGCAATGTGAAGAAACAAATCCAACGCCATTCCCAAGATGAAGAAATCGTAGTAACCACCTACGAAGGGATGCATACACACCCTGTCGATAAGTCAACCGAAAGCTTCGATCAAATCTTGGGAAACCTGTTCCTAAACAACCTACTCTGCAGTAATGTGCCTCCAACTTTGGAATAG	465	0.4172	MEKHQVEFPTSSSTSLAAYNSNMVHVEKEEVLRTQGKAISAQKEGDKQEIKQHRYAFQTRSPVDVLDDGYQWRKYGKKIVKSNKFPRSYYRCSHRGCNVKKQIQRHSQDEEIVVTTYEGMHTHPVDKSTESFDQILGNLFLNNLLCSNVPPTLE*	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0309	154	Gene3D	WRKY domain	53	119	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr1g0309	154	ProSiteProfiles	WRKY domain profile.	61	126	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr1g0309	154	SUPERFAMILY	WRKY DNA-binding domain	58	125	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr1g0309	154	Pfam	WRKY DNA -binding domain	67	124	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr1g0309	154	PANTHER	WRKY FAMILY TRANSCRIPTION FACTOR	1	142	-	-
	Apr1g0309	154	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	1	142	IPR044810	GO:0003700
	Apr1g0309	154	SMART	WRKY_cls	66	125	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0309	Apr-Chr1	3650959	3652142	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0309	15	139	WRKY Transcription Factor Family	AT5G13080	56.000	4.09e-46	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Apr1g0309		WRKY	1e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0309	-		-	gmx:100796070	232.646