Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0307 ATGGACTGGAATTTGAAAGCACCTTCTTGGGAATTGGGGGATGTGGATAAGGCAACCATACCCAACATAGGAACAATGGAGGAGCCAAGCAGATTTGGAGTCTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACTGAATCAGTGCATGTCAAGTCTAAAGATGCTGCTGGTGTTGGTGTTGGTATCTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAATGCAACCATGACAGTGTCATGCCTTGTTGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGTGAACTACATTCCAAGACTCCAGAGGTCACAATTGGGGGCTTGAAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTCCATTCGCTGGAGGAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACAGAAGGAGAAGAAAGCCTCAGCCTGAACCCCTCACGAGACCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCGTTCTCAAGTGCACATGTATATCCTTCAACTGCAGTGGTGAACCCCACTTGGAGTGGAGGACTTGTTACTTCCTCTGCAGATGCTAGGCTTCACAACCACAGCCACAACCAGCAAGTGCATTTTCTTGGGTCTTCTCTAAGCAGCTATAAAGATCAAGGGAAGCAACTAGCGTTCTTACAATGTGACAACAGCCAAACCCCACCTTTTGAAGCTGCTTCTGTGTGCCACACACTTGTGAGGAGCAACCCTTTATCAGAAACTTGTGGGGTTAGAAGCAAAATGTTGTGTGATAGCTTAACAACTTCAGTTCACGACTCCCCCTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCTTTGAACCAAATGGTGGTGCAACCTTCTTCAATGTCCCTTATGCAATCCTTAGGCCTCAGCTTGCAAGATAGCAGCTTAGAGTCGGTGGAGCGTGTCTTGGTTCCCAATGGGAGTGACCATTGTTCCTCAATGTATAACTTGGGTTCTGATGGATCCCAGTGCAATGAAGCCCCTCAACTTTTTCCCTTTCAATGGGAATAG 1146 0.4616 MDWNLKAPSWELGDVDKATIPNIGTMEEPSRFGVYRMKGEFSVDLKLGQVGNSGTESVHVKSKDAAGVGVGISKVASSPSGSSKRARAINNATMTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEEFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSAHVYPSTAVVNPTWSGGLVTSSADARLHNHSHNQQVHFLGSSLSSYKDQGKQLAFLQCDNSQTPPFEAASVCHTLVRSNPLSETCGVRSKMLCDSLTTSVHDSPCALSLLSSSQTHTPLNQMVVQPSSMSLMQSLGLSLQDSSLESVERVLVPNGSDHCSSMYNLGSDGSQCNEAPQLFPFQWE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0307 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 381 IPR044817 GO:0003677
Apr1g0307 381 Coils Coil 148 168 - -
Apr1g0307 381 MobiDBLite consensus disorder prediction 162 183 - -
Apr1g0307 381 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Apr1g0307 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 381 - -
Apr1g0307 381 Pfam SBP domain 98 171 IPR004333 GO:0003677
Apr1g0307 381 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Apr1g0307 381 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0307 Apr-Chr1 3611215 3615000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0307 1 381 SBP-box Gene Family AT5G50670 40.842 4.31e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr1g0307 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0307 - - gmx:100787407 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1164 2 17891477 17894053 Apr1g0307 1 3611215 3615000 PCT