Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0301 ATGGTTTCAGTGCACGAGAGATTGAAGAAATTCGTGGGGCACAGATGGATGGTGTTTGTGTGTGCAATGTGGGACATGTCGTTTGCGGGAACGTCTTACATGTTTGGGAGCATATCGCCGGTGATAAAGAGCAACATGGGTTTCAACCAGAAGGAGGTGGCTCTCTTGAGTGTGGCCAAGGATTTGGGTGACAACGTTGGACTTCTAGCTGGGAAAATCAGTGAGACATGTCCCACTTGGGGTGTTATACTTGTTGGGGTGTTCCAGAATGTTGTTGGTTATGGCCTTGTTTGGCTCATCGTCACGCACAGGTTTCCTTCTTTGCCTTTGTGGGTGCTATGCATTCTAATCTTTGTGGGGCAAAATGGATCAACATATTACAACACAGCTGCTCTCGTTTCTTGCGTGCAAAGTTTCCCTGAAAGAAGAGGACCCGTGGTGGGAATATTGAAAGGCTTCGTTGGCCTAAGCGGTGCAATTTGGACTCAAATAATAGCCATGATCAAAATCCCTGATCAGGCATCACTGATTTTCATTATTGCAGTTGGACCCGCAATGGTTTCGTTTGCTCTCATGTTCATCATAAGACCTGTTGAGAGTTATAGACAATCTAGATCTTCCGATGACTCAGGATTCATGTTTATCTACAGCATTTGTCTTCTGTTGGCTGCTTATTTGATGGGAGTTTTGCTGCTAGAGAATATGCTTGATTTGGACCAGAGCATCATCACATTATTTCCTGTTATCTTGATCATTCTCATCTTGCTTCCAATTATAGTTCCTATTCTATTGGTTTTATTCTCTGATCCCAAAAAAGGGCCAAGGGATGTATTTCGATTTCAAGCTAGACTTTGGCAAGCAGTTACCACAGCTGTGAAGAAAATCAAGCGAAAAAATGGCCCCCATAGAGGAGAGGATTTCACCTTATCACAAGCAATGGCCAAGGCTGATTTTTGGATCATGTTCTTCTCTCTAGTCATGGGTGCAGGATCCGGGTTGACAGTGATAAACAACATGGGTCAGATATGTCAATCCTTGGGAGACGACAATGTCAATGTGTATATATCAGTTATCAGCATATCGAACTTCCTTGGTCGTGTTGCTGGCGGCTACTTCTCGGAGGTTATAGTAAGAAATTTTGCGTACCCGAGAATTGTTGCATTGGCAGTGATTCAAGCAATGATGTCTTTGGGACTCTCCTATTATGCATTGGGCTTGGTTGGACAAATTTATGTAGTGGCTATATCTACGGGTTTTGGATATGGTGCCCACTGGTCAATTGCCTTAGCTGCAGCTTCAGAACTATTTGGGTTGAAGAACTTCGGAACTTTGTACAATTTTCTTACTGTGGCAAGCCCAACTGGGTCTCTATTTTTATCTGGAGTGGTAGCAAGCACAATATACGACTATTATGCGGAGCAGCAAGCCAAACACCGTATGATGCAAACTTATGGTGCCTCAACCAACTTGGCAATGCCTTATGTCACTGGAAATAATGAGTTGCTTCTTTGTGAGGGTAACATTTGCTTCTCCCTAACATGTGCAGTCTTAGCATTTGTTTGCTTATTTGCTGCTGCTTTAAGCTTGATCATAGTTCACCGGACTAAGAGGTTCTATGGTCAACTTTATGGGAAGACTCGAACTTGA 1647 0.4335 MVSVHERLKKFVGHRWMVFVCAMWDMSFAGTSYMFGSISPVIKSNMGFNQKEVALLSVAKDLGDNVGLLAGKISETCPTWGVILVGVFQNVVGYGLVWLIVTHRFPSLPLWVLCILIFVGQNGSTYYNTAALVSCVQSFPERRGPVVGILKGFVGLSGAIWTQIIAMIKIPDQASLIFIIAVGPAMVSFALMFIIRPVESYRQSRSSDDSGFMFIYSICLLLAAYLMGVLLLENMLDLDQSIITLFPVILIILILLPIIVPILLVLFSDPKKGPRDVFRFQARLWQAVTTAVKKIKRKNGPHRGEDFTLSQAMAKADFWIMFFSLVMGAGSGLTVINNMGQICQSLGDDNVNVYISVISISNFLGRVAGGYFSEVIVRNFAYPRIVALAVIQAMMSLGLSYYALGLVGQIYVVAISTGFGYGAHWSIALAAASELFGLKNFGTLYNFLTVASPTGSLFLSGVVASTIYDYYAEQQAKHRMMQTYGASTNLAMPYVTGNNELLLCEGNICFSLTCAVLAFVCLFAAALSLIIVHRTKRFYGQLYGKTRT* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0301 548 Pfam Nodulin-like 15 262 IPR010658 -
Apr1g0301 548 SUPERFAMILY MFS general substrate transporter 14 537 IPR036259 -
Apr1g0301 548 Gene3D MFS general substrate transporter like domains 13 207 IPR036259 -
Apr1g0301 548 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 271 - -
Apr1g0301 548 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 272 548 - -
Apr1g0301 548 Gene3D MFS general substrate transporter like domains 311 540 IPR036259 -
Apr1g0301 548 PANTHER NODULIN-LIKE/MFS TRANSPORTER 3 271 - -
Apr1g0301 548 PANTHER NODULIN-LIKE/MFS TRANSPORTER 272 548 - -
Apr1g0301 548 CDD MFS_Mch1p_like 14 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0301 Apr-Chr1 3535690 3539638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0301 5 545 Nodulin-like Gene Family AT5G50630 50.909 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0301 - - gmx:100784744 861.292