LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0300	ATGGAATGTAATAAAGATGAAGCTTTGAGGGCTAAAAGGCTTGCAGAGAAGATGCTTTCACAGAGGGACCTTGGGGGCGCAAGAATTCTTGCAATGAAGGCTCAAAAGTTATATCCCGATATTGATGGCCTTCGTCAGTTGCTGGCGACTATTGAGGTGTATATCTCTGCTGACAAAAGAGTAAATGGAGAGGTTGATTGGTACAAGATCCTTGGTGTGCAACCCTTGGCTGATGATGAAACAGTTCGAAGACATTACAGGCAGCTGGCTCTTATTTTGCACCCTGATAAAAATAAATCGGTAGGGGCAAATGGGGCATTTAACCTTATTTCACAGGCTTGGAGTTTATTATCTGATAAAGCCAGGAAAATCATCTATGACCAAAACTACAGTATATGGGGCATATATCAAGGAAATTCAGGTGGGAAACCTTCAATACCAGCTAGTCAGAATGGTTTATATAATATGTCCAATACTGCTAATTGGAAGGACAGAGATCATAGGAGTGCTATTCCTCTCAATTCTACTCCACTCAGTCCAGTGCCTCCTGTGACATTCAAACAGACATTTTGGACCATGTGCAGTTTCTGCAGGACAAAGTTTGAGTACTATACTGTTTATATCAACTGCAATCTTGTCTGTACCACCTGTCATAAGCCATTTTTTGCTTTTGAGGCTTTGCCCCCAACTGCATGCAGAAATGTTTCATCCATTTCAAGAATTTCTCAGATGGAGCAACACAACTTCACCTCTACTGGTTTAGGTAGGACACCAATTTCTGCTGTCAACTTGTCACGTGGGTCAGGTCCTTTCTCTATGCACAGTGGTATTACCAGTGTACCAATCTCAGCTTCTACTGCTGCTGAAGCTTCTGGTGCTTTTAGGATGTCATCTGAGAATTTGAAAAGAAGACACGAAGATTTGACACCTGTCATGAAGGAGGAGGTTCATTTTGGGAAAACTCATGCTGTTGAGAGAACTGGTGCTGGTTCAGCTTTTCAGTCCTCTTGTCTTGGTTCAAATTCTATTCTGAAAGGAGACAAGCCAAAGAAAAGAAGGCGCATTGATGAACGTAAAGTTGATAGCGATAGAAGAAATATGAAAGCTAATACAACATCTCAAAAAGAAGGAACAAACTTGACCAATGAATTTGGATCTCAGAAATACAGTTCTGATACAGGAAGGGTTAATGTTGCTGGAAGTTACAAGCGCAATGGTATTAGGGACGTATCACAGCTGCAAATGAGGACAATATTGATGGAAAAGGCTCAGAAGGAGATTCTTAAAAAGCTTGATGAATGGAAGGCTTCTTCAGTATCAAAGAATTTGTGCCAGTCAAAGAATACTGATACAGACATCAGAGAGAAGGACAGAGAAAATGCCACAAATGGTGTAAAACCTGGTACCCAGGAATTTGCCAATTCTGAAACCATCAGCGAAAAGTGTTTCTCTACTGATCCAGAGCCAGAGATGCCTGATTCTCTCTCAATGAATGTTCCAGATCCAGATTTCCATGATTTTGATGGAGACCGTATTGAAAATGCTTTTGGTGAGAACCAGGTGTGGGCTGTATATGATAATGAGGATGGCATGCCGCGCTACTATTGCTTAATCCACAATGTAATCTCAAAGGATCCTTTCCAAATGAGGATTAGCTGGCTGAACGCCAAAAGCAATGATGAATTGGCCCCAATAAAGTGGGTCAGTTCTGGCTTTCCTAAGACCTCTGGAGATTTCAGAATAGGAAAGCGAGGATTATATAGCACATTTAATTCCTTCTCGCACAGGGTTAAGTGGACAAAAGGTTCAAGAGGGGCTGTCCACATATATCCGAAGAAAGGTGATATATGGGCTCTGTATCGGAACTGGTCCACTGACTGGAATGAATTTACTGACGATGAAATCATACAGAAATATGACATGGTGGAGGTGCTTGAAGACTACAGTGAAGAACAAGGTGTGAATGTTGCCCCACTTGTCAAGGTTGCAGGTTTCAAGACAGTGTTCCGCCATAATGCCGATCCAAGAAAAATCAAGAATATTTCAAGGGAAGAGATGTTTCGTTTCTCACACCAGGTTCCTTCATACTTGCTTACAGGTGAAGAGGATCAGAATGCTCCAAAAGGTTGCTTGGAGCTTGATCCTGCTGCTACGCCTATGGAACTTCTTCAGGTGTTCACTGAAGATGCACAGCCAGAAATGGTAATGACAACTGAAAAATCTTTGGAAGATGAATTGAGGCACAAAGAGAATTCGAGGGAGGATGGTTTGGTTGAGAGTTCCCAGACAACCAAGGAAAAAAATTCTGATGCAGCACTGAGAGAGAAGAGAAGTAGGCCCGAGATTTTGTTTGTATATAAGCGGAAACGTTTTAGGAAAAACAAAGAGAGCAATGAAGACTAG	2403	0.4178	MECNKDEALRAKRLAEKMLSQRDLGGARILAMKAQKLYPDIDGLRQLLATIEVYISADKRVNGEVDWYKILGVQPLADDETVRRHYRQLALILHPDKNKSVGANGAFNLISQAWSLLSDKARKIIYDQNYSIWGIYQGNSGGKPSIPASQNGLYNMSNTANWKDRDHRSAIPLNSTPLSPVPPVTFKQTFWTMCSFCRTKFEYYTVYINCNLVCTTCHKPFFAFEALPPTACRNVSSISRISQMEQHNFTSTGLGRTPISAVNLSRGSGPFSMHSGITSVPISASTAAEASGAFRMSSENLKRRHEDLTPVMKEEVHFGKTHAVERTGAGSAFQSSCLGSNSILKGDKPKKRRRIDERKVDSDRRNMKANTTSQKEGTNLTNEFGSQKYSSDTGRVNVAGSYKRNGIRDVSQLQMRTILMEKAQKEILKKLDEWKASSVSKNLCQSKNTDTDIREKDRENATNGVKPGTQEFANSETISEKCFSTDPEPEMPDSLSMNVPDPDFHDFDGDRIENAFGENQVWAVYDNEDGMPRYYCLIHNVISKDPFQMRISWLNAKSNDELAPIKWVSSGFPKTSGDFRIGKRGLYSTFNSFSHRVKWTKGSRGAVHIYPKKGDIWALYRNWSTDWNEFTDDEIIQKYDMVEVLEDYSEEQGVNVAPLVKVAGFKTVFRHNADPRKIKNISREEMFRFSHQVPSYLLTGEEDQNAPKGCLELDPAATPMELLQVFTEDAQPEMVMTTEKSLEDELRHKENSREDGLVESSQTTKEKNSDAALREKRSRPEILFVYKRKRFRKNKESNED*	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0300	800	MobiDBLite	consensus disorder prediction	743	761	-	-
	Apr1g0300	800	PRINTS	DnaJ domain signature	68	86	IPR001623	-
	Apr1g0300	800	PRINTS	DnaJ domain signature	86	101	IPR001623	-
	Apr1g0300	800	PRINTS	DnaJ domain signature	102	122	IPR001623	-
	Apr1g0300	800	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Apr1g0300	800	Pfam	Domain of unknown function (DUF3444)	495	702	IPR024593	-
	Apr1g0300	800	MobiDBLite	consensus disorder prediction	345	370	-	-
	Apr1g0300	800	Gene3D	DnaJ domain	55	137	IPR036869	-
	Apr1g0300	800	Coils	Coil	798	800	-	-
	Apr1g0300	800	CDD	DnaJ	66	119	IPR001623	-
	Apr1g0300	800	SMART	dnaj_3	65	122	IPR001623	-
	Apr1g0300	800	SUPERFAMILY	Chaperone J-domain	42	126	IPR036869	-
	Apr1g0300	800	MobiDBLite	consensus disorder prediction	371	392	-	-
	Apr1g0300	800	MobiDBLite	consensus disorder prediction	338	392	-	-
	Apr1g0300	800	MobiDBLite	consensus disorder prediction	743	775	-	-
	Apr1g0300	800	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-
	Apr1g0300	800	Pfam	DnaJ domain	66	127	IPR001623	-
	Apr1g0300	800	PANTHER	HEAT SHOCK PROTEIN-LIKE	1	748	-	-
	Apr1g0300	800	PANTHER	BNAC03G44070D PROTEIN	1	748	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0300	Apr-Chr1	3515152	3519206	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0300	4	229	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	29.487	2.23e-26	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0300	-		-	gmx:100797672	1132.47