Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0299 ATGGACAGCAACCAGCAAGGAACCCAACCCCAAACGCAGAACCAAACACAAGGGGGAGGGTATCAGGGAGGTGCAGGAACACCAGGAACCGGTGCACCCTCATTTCAACACCTTCTGCACCAGCAACAGCAACAGCTTCAGATGTTCTGGTCCTACCAACGCCAAGAGATCGACCACGTCAACGACTTCAAGAACCACCAACTCCCTCTCGCACGCATCAAGAAGATCATGAAAGCCGACGAAGACGTTCGCATGATCTCAGCCGAAGCTCCAATCCTCTTCGCCAAGGCTTGCGAACTCTTCATCCTCGAACTCACCATCCGCTCCTGGCTCCACGCCGAAGAGAATAAACGGCGAACCCTTCAGAAAAACGACATCGCCGCCGCCATCACTCGCACCGACATCTTCGACTTCCTCGTCGACATCGTCCCTCGCGATGACATCAAAGACGACGCCGCACTCGTCGCCGCCACCGCCAGCGGCGTTCCTTACTATTACCCTCCCATTGGCCAGCCCGCCGGCATCATGATTGGCCGTCCCGCCGTCGATCCCGCCACCGGAGTTTATGTTCAGCCCCCGTCTCAGGCGTGGCAATCCGTCTGGCAGTCCGCTGCCGAGGACGCCTCCTACGCCACCGGCGGAAGTGGTGCTCAGGGTAACCTCGACGGCCAGAGCTGA 678 0.5885 MDSNQQGTQPQTQNQTQGGGYQGGAGTPGTGAPSFQHLLHQQQQQLQMFWSYQRQEIDHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDIKDDAALVAATASGVPYYYPPIGQPAGIMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYATGGSGAQGNLDGQS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0299 225 Gene3D Histone, subunit A 33 145 IPR009072 GO:0046982
Apr1g0299 225 Pfam Core histone H2A/H2B/H3/H4 58 130 IPR007125 GO:0003677
Apr1g0299 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 225 - -
Apr1g0299 225 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 225 - -
Apr1g0299 225 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g0299 225 MobiDBLite consensus disorder prediction 1 34 - -
Apr1g0299 225 SUPERFAMILY Histone-fold 28 139 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0299 Apr-Chr1 3508725 3513125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0299 31 224 CCAAT-HAP5 Transcription Factor Family AT3G48590 81.068 3.69e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr1g0299 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0299 - - gmx:100818447 362.459