LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0285	ATGGCAGTCACATTCTACAACCTTAGCTCTGCGTCTGGATTGAAGAAGCTGGATGAGTACCTTCTCCCGCGCAGTTATATCACTGGGTACCAAGCTTCAAAGGATGATCTTACTGTCTATGCAGCTTTGCCAACGGTTCCGTCGGATGAATATGTGAATGTGTGCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATATCCGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGGAGGGGTCTCTTGTTGCCGAGGATGTTGCAACTCCCCCAGCTGCTGACACGAAGGCTTCTGCTGCTGAGGATGATGACGATGATGATGTAGATTTGTTTGGTGAAGAGACCGAGGAAGAGAAGAAGGCAGCTGAGGAAAGGGCAGCTGCAGTGAAGGCATCTGCAAAGAAGAAAGAGTCTGGTAAATCATCTGTTCTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATCCAAACTTGCTCCTGTTGGGTATGGTATCAAGAAACTGCAAATTATGCTTACCATTGTGGATGACCTAGTTTCTGTCGACAATCTTATTGAGGAATATCTTACAGTCGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATAA	693	0.4589	MAVTFYNLSSASGLKKLDEYLLPRSYITGYQASKDDLTVYAALPTVPSDEYVNVCRWYKHIDALLRISGVSGEGSGVTVEGSLVAEDVATPPAADTKASAAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEYVQSCDIVAFNKI*	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0285	230	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	219	230	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Apr1g0285	230	SUPERFAMILY	eEF-1beta-like	138	230	IPR036219	-
	Apr1g0285	230	SMART	EF1_GNE_2	141	230	IPR014038	GO:0003746\|GO:0006414
	Apr1g0285	230	MobiDBLite	consensus disorder prediction	86	109	-	-
	Apr1g0285	230	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	105	113	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Apr1g0285	230	Pfam	EF-1 guanine nucleotide exchange domain	143	230	IPR014038	GO:0003746\|GO:0006414
	Apr1g0285	230	Gene3D	-	134	230	IPR014717	-
	Apr1g0285	230	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	230	-	-
	Apr1g0285	230	CDD	EF1B	139	230	IPR014038	GO:0003746\|GO:0006414
	Apr1g0285	230	Gene3D	-	4	78	-	-
	Apr1g0285	230	SUPERFAMILY	GST C-terminal domain-like	11	67	IPR036282	-
	Apr1g0285	230	PANTHER	RIPENING REGULATED PROTEIN DDTFR10-LIKE	1	230	-	-
	Apr1g0285	230	Coils	Coil	113	133	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0285	Apr-Chr1	3348871	3351319	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0285	5	230	Eukaryotic Initiation Factors Gene Family	AT2G18110	81.140	3.32e-115	327

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr1g0285	1	3348871	3351319	Apr1g0285	1	3348871	3351319	ECH