Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0284 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCGAACAACAACAACAAGAGACCTTCATCTTCTGAAGACAAGACTCCTTCTCCTTCCCCAAAGCGCCAAAAGGTCGACAATGGCGTCACCGCCTCCGACAAACCCTCGCCGCCGCCGGGAAATTCCAAGGATTTGAGCCCGCCGGAGCCCCCTGCTGATCCCGGAGAATGCGGCCCCCCACCCGCTCAGATCGCCGGAACCGCCGCTCCCGATGCTAAGAACGACGCCACGCCGCCGATCGCTGATGGTTCTGCACCGACTCTGGTGGCTGATAAGCCTAGGGGTTCGTTCTCTTCTTGGAGTTTATATCAGAAGCAAAACCCAAATTTCGAAGCTTCAGTTCCTTGGTGCAGGCTTTTGTCTCAGTCTGCGCTGAATCCAAATGTTCCCATTTGCACACCCAACTTTACTATTGGCTCTAGTAGAAGTTGCAACTTTCCACTGAAGGATCAGACTATAAGTGGAAATTTATGCAAAATCAAGCTTACTCAGCGTGAGGGGAGTGCTGTGGCTGTGCTTGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTGAACGGGACGCTTGTCAAGAAGAGTACCAGCTGCGTGCTTAACTCGGGTGACGAAGTGGTTTTTGGTTTGCTGGGAAATCATTCTTATATTTTTCAGCAAGTAAATGCTGAGGTTGCTCCTGTCAAGGGTGCAGAAGTTCAGAGCGGTGTTGGCAAGTTTTTGCACATTGAGAGGAGAGCAGGAGATCCTTCAGCTGTGGCTGGAGCTTCTATTTTGGCGTCTCTTTCTAGCCTCAGACAGGATCTAACAAGATGGAAGTCTCCATCACCAACCGCTGGTAAACCTCACCAGGGTGTTGATGTTCCTAGTCAATCTGTTCTGCATGATAGCACAGAAACTGAGCTTGATGGCCTGGAAGGCAACTCAGCTCCAAGTATAGGGACTGAAAAAGCTGCTGATGTTGGAGCAAGCGACAAGAATTCTCCCATGGATTGCGACCCAGATGATGCAGGCACAGAGGCAGGCAATGTATTGGAAGAAAGAAATGGGACGAGGGATGGGCAAGCTGCATCAACTTCGGGTACTTCTGTACGCTGTACAGTTTTTAAAGACGATGTCAATGCTGCAATACTGGATGGAAAAGAAATAGAAGTGTCCTTTGACAACTTCCCGTACTACTTAAGTGAAAATACAAAAAATGTCTTGATTGCAGCTTGCTTTATACACCTGAAACATAAAGAACATGTGAAGTACACCACAGATCTTACAACCATAAACCCTCGTATTCTACTCTCAGGACCTGCAGGGTCAGACATATATCAGGAGATGTTGGTGAAAGCACTCGCAAAATACTTTGGAGCTAAATTGCTAATATTTGATAACCATTCTCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAATGCCGAGAAATCCTACAGCTGCCCCAAACAAAGTCCTGCAGCCACAGACACGGCTAGGAGCATGGATCCATCAGCTAGTGAATCAGATACACCAAGCTCTTCTAATCCACCTACTTCATTTGGCTTTGAGTTTCATCCTAAATTGGAAACTGACAATGTACCGTCTACCTCTGGGACAGCAAAAAATTGTGTGTTCAAACTAGGTGACCGGATAAAATTTAGCTGGTCATCTTCTGGTGGCATGTATCAGACGTCTTCTTCAAGGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGTTGGTCAAGGATTTTTTTGCAATGTGTCTGATCTTCGATTAGAGAATAGTGGCATTGAAGAATTCGACAAATTACTTATTAATACATTGTTTGAGGTTGTGTTTAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAAAAGTCTATAGTGGGAAATGGAGATCCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGATAATGTGGTGGTGATAGGTTCGCATACTCACACCGACAATCGGAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACCTGGCTTTTCCAGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCGAACAAAACGTTAACAAAGCTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAACAACTTGATCGAGATGTTGAAACTCTCAAGATCAAAGGAAATTTGCACCATTTACGCACAGTTTTAAGCCGTTGTGGAATTGGATGTGAAGGACTTGAGACCTTGTGCATAAAGGATCAGACACTTACAATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCAGAATTCTGAAACTGATCCTGATACAAAGCTTGGATTGTCTTGTGAGAGCATCCAATATGGAATTGGGATCTTACATGCCATCCAGAATGAGTCAAAGAGCTTAAAGAAGTCTCTTAAGGATGTTATAACAGAAAATGAATTTGAAAAGAGGCTCTTGGCTGATGTTATTCCGCCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAAAGACCTGAGCTATTTTGCAAAGGGCAATTAACCAAGCCCTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTTGCAAAAGCAATTGCTACTGAAGCAGGTGCAAATTTCATCAACATTTCTATGTCAAGCATCACATCTAAGTGGTTTGGCGAGGGTGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCGAGTAAAATTGCTCCTAGCGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCTGGGGAGCACGAAGCCATGCGGAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAGAGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGATCTTGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCAGATGCTTCAAATAGGGCAAAGATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATGTTGATCTGGACGCAGTTGCAAACATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGGAACATGCTACTGCTCTAGCAGATGGTAGACCTGCTCCAGCATTATGTGGAAGTGCAGATATCCGATCCTTAAACATGGAAGACTTCAAATATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCTGTAAATATGACGGAGCTCCAACAGTGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTGAAAAAAGCACTCAGCTATTTCATGTGA 3615 0.4387 MVSTRRNSGSFSNNNNKRPSSSEDKTPSPSPKRQKVDNGVTASDKPSPPPGNSKDLSPPEPPADPGECGPPPAQIAGTAAPDAKNDATPPIADGSAPTLVADKPRGSFSSWSLYQKQNPNFEASVPWCRLLSQSALNPNVPICTPNFTIGSSRSCNFPLKDQTISGNLCKIKLTQREGSAVAVLESTGSKGSVLVNGTLVKKSTSCVLNSGDEVVFGLLGNHSYIFQQVNAEVAPVKGAEVQSGVGKFLHIERRAGDPSAVAGASILASLSSLRQDLTRWKSPSPTAGKPHQGVDVPSQSVLHDSTETELDGLEGNSAPSIGTEKAADVGASDKNSPMDCDPDDAGTEAGNVLEERNGTRDGQAASTSGTSVRCTVFKDDVNAAILDGKEIEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHVKYTTDLTTINPRILLSGPAGSDIYQEMLVKALAKYFGAKLLIFDNHSLLGGLSSKEAELLKDGFNAEKSYSCPKQSPAATDTARSMDPSASESDTPSSSNPPTSFGFEFHPKLETDNVPSTSGTAKNCVFKLGDRIKFSWSSSGGMYQTSSSRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEVGQGFFCNVSDLRLENSGIEEFDKLLINTLFEVVFSESRNAPFILFMKDAEKSIVGNGDPYSFKSKLENLPDNVVVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLSRCGIGCEGLETLCIKDQTLTIENAEKIVGWALSHHLMQNSETDPDTKLGLSCESIQYGIGILHAIQNESKSLKKSLKDVITENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDASNRAKILKVILAKEDLSSDVDLDAVANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHATALADGRPAPALCGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKKALSYFM* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0284 1204 Gene3D - 126 234 - -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 51 69 - -
Apr1g0284 1204 Gene3D - 1072 1166 - -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 1 101 - -
Apr1g0284 1204 CDD FHA 127 227 IPR000253 GO:0005515
Apr1g0284 1204 SMART AAA_5 936 1073 IPR003593 -
Apr1g0284 1204 Pfam ATPase family associated with various cellular activities (AAA) 940 1069 IPR003959 GO:0005524|GO:0016887
Apr1g0284 1204 Pfam AAA+ lid domain 1093 1133 IPR041569 -
Apr1g0284 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1176 IPR027417 -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 1 50 - -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 493 529 - -
Apr1g0284 1204 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 79 1204 - -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 279 369 - -
Apr1g0284 1204 Pfam FHA domain 148 217 IPR000253 GO:0005515
Apr1g0284 1204 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 79 1204 - -
Apr1g0284 1204 ProSitePatterns AAA-protein family signature. 1043 1062 IPR003960 GO:0005524|GO:0016887
Apr1g0284 1204 SUPERFAMILY SMAD/FHA domain 125 220 IPR008984 GO:0005515
Apr1g0284 1204 CDD AAA 938 1071 - -
Apr1g0284 1204 Gene3D - 898 1179 IPR027417 -
Apr1g0284 1204 MobiDBLite consensus disorder prediction 493 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0284 Apr-Chr1 3312357 3324197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0284 899 1131 Calmodulin-binding Proteins AT3G56690 41.350 1.37e-41 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0284 1 3312357 3324197 Apr1g0284 1 3312357 3324197 ECH
Apr10g1492 10 27346986 27369057 Apr1g0284 1 3312357 3324197 PCT