Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0278 ATGGGGTTCCATGACATGGGTTTGGTGTTGTGTTTTGCTTGGTGTGTGTTTTATGTGGGAAGTTGCAGTGCTCAGTTGCAGTCCTCTCAGACCCAAGTGCTTCTCCAGTTGAAAAAGCACTTGGAGTACCCAAGACAATTGGAAATGTGGAAAGATCGTTGGACAGAAATTTGCTCTATTTCTTCTTCTACACAAGTGAACATCACATGCAACGACAATTTTGTTACTGAGCTCTCCATATTGGGGGATAAGCCAACAAAGGGTAGAGATTTTGATGGCTTTGCTATTCCAAATCAAACACTTTCTCAGAGCTTCTCCATGGACTCTTTTGTGGCAACTCTAGCAAGGTTAACTAGCCTGAGAGTACTTCGTCTTGTTTCTTTGGGTATGTGGGGACCACTTCCTGATAGAATTCACCGACTTTATGCACTAGAACAATTGGACATGAGTTCAAACTACCTATATGGATCAATCCCTCCAAAGATTTCCACAATGGTGAACCTCCAAACGCTTATATTGGGTGATAACTTCTTCAATGGTACTATCCCAAGCTTGTTTAATTCATCAAGTAATCTTATATTTCTTAGTTTGAAAAATAACTGGTTGAAGGGTCCTTTTCCACCTTCAATCCTTAGTGTCAACACCCTAGTTGGCATTGACATGTCCAGCAACCAAATATCAGGGAGCTTGCAAGATTTTACTGCTTTGAGTAACTTGGAACAGCTAGATTTAAGTGCAAACAGATTAGAATCTGCACTACCTGCTATGCCAAAAGGGTTGATAAGGCTTTTCCTTAGCAGAAACTCCTTTTCAGGTGAAATTCCTAAGCACTATGGTCAACTAAATAAGCTTCAACAGCTTGATGTTTCCTTCAATGCACTCACAGGCAGTGCTCCTGCTGAACTTTTTTCTTTCCCTAACATCAGTTACTTGAATTTGGGATCCAATATGTTTAGTGGGCCACTACAAAATCACCTAAGATGTAGCAGCCAACTTAGATTTGTGGATATATCACACAACAGGTTAGTGGGGTACTTGCCATCTTCACTTGGCACTGGAATAGAAAGTAGAGTTGTTAGGAGTGATGGAAACTGTTTATTAGGAAGTGTGCATAATCAGCATGCAGCATCCTACTGCGCAGTGTCTCATGTGAAGAAAAAATCATACAGAGTTGGAATTTTCGTTGGTGTCATTGTGGGCATTGTTGTGCTCACTGTGGTTTTGGCTTTGATCATTGTCATTACTTGTAAAAGGTTTTGCCCTCGAGGGATGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCTACACTGCTGGGTTCTCCTCTGAGCTTGTTACAAGTGCAAGGTATGTTTCTGAAGCTGCAAAGTTAGGAAGAGAAGACCTCCCTGTGTGTCGTTCATATTCCTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGCGAAAATATATATGGGAAGCTTTACAGAGGAAAACTGGAGAGTGGGATACAAGTGGTAGTAAGGTGCTTGCCTTTGTCAAAAAAGTATTCAATCAGGAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTTCGTCACCCGCATTTGGTATCCCTCCTGGGACACTGCATTGATGGAGCAGTAGGAGAGCATAATGAGACTAACGTCTTTCTCATTTATGAATGTGTCTCAAATGGAAGTTTCCAGACTTTTCTCACTGGTGATAGTCCTGGCAAGGTTTTCAATTGGTCAGAGCGATTGTCAGTTCTAATTAGCATTGCTAAGGCTGTCCACTTCCTACACACTGGCATGATTCCTGGTTTCTTCAAAAATCGACTTAAGACCAACAATATATTGCTGAATGAGAATTGGATGGCAAAGTTAAGTGATTATGGATTGTCCATTATCTCAGAAGAAACTGATGCATGTGGGGTAAAAGGAGAAAGTGCTAACTCATGGCAAATGAAAAGGCTTGAGGATGATGTTTATAGCTTCGGATTCATACTACTTGAGGCACTAGTTGGACCTTCAGTGTCAGCTAAAAGCGAGGCCATCATGCTGAATGCAATGGCATCTTGCAATAATCAGGATGGGTGGAAACAGGTTGTGGACCCAGTTGTGCAAGCTACATGCTCTAAAGAATCATTGTTTATTGTGATTTCCATAACAAACAAATGTATTTCTCCGGAGTCCTGGAGCCGACCATCCATTGAGGATGTCCTTTGGAACTTGCAGTATGCTTCTCAAGTTCAAGTTCAGGCAACAGCTGATGGGGATCAGAAAATATGA 2295 0.4139 MGFHDMGLVLCFAWCVFYVGSCSAQLQSSQTQVLLQLKKHLEYPRQLEMWKDRWTEICSISSSTQVNITCNDNFVTELSILGDKPTKGRDFDGFAIPNQTLSQSFSMDSFVATLARLTSLRVLRLVSLGMWGPLPDRIHRLYALEQLDMSSNYLYGSIPPKISTMVNLQTLILGDNFFNGTIPSLFNSSSNLIFLSLKNNWLKGPFPPSILSVNTLVGIDMSSNQISGSLQDFTALSNLEQLDLSANRLESALPAMPKGLIRLFLSRNSFSGEIPKHYGQLNKLQQLDVSFNALTGSAPAELFSFPNISYLNLGSNMFSGPLQNHLRCSSQLRFVDISHNRLVGYLPSSLGTGIESRVVRSDGNCLLGSVHNQHAASYCAVSHVKKKSYRVGIFVGVIVGIVVLTVVLALIIVITCKRFCPRGMSEQHLLHKTVQDSYTAGFSSELVTSARYVSEAAKLGREDLPVCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLESGIQVVVRCLPLSKKYSIRNFKLRLDLLAKLRHPHLVSLLGHCIDGAVGEHNETNVFLIYECVSNGSFQTFLTGDSPGKVFNWSERLSVLISIAKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSIISEETDACGVKGESANSWQMKRLEDDVYSFGFILLEALVGPSVSAKSEAIMLNAMASCNNQDGWKQVVDPVVQATCSKESLFIVISITNKCISPESWSRPSIEDVLWNLQYASQVQVQATADGDQKI* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0278 764 Pfam Protein tyrosine and serine/threonine kinase 488 743 IPR001245 GO:0004672|GO:0006468
Apr1g0278 764 ProSiteProfiles Protein kinase domain profile. 482 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0278 764 PANTHER OS07G0166700 PROTEIN 5 763 IPR045272 GO:0004714|GO:0006468
Apr1g0278 764 PANTHER BNAA09G06560D PROTEIN 5 763 - -
Apr1g0278 764 SMART LRR_typ_2 141 165 IPR003591 -
Apr1g0278 764 SMART LRR_typ_2 281 305 IPR003591 -
Apr1g0278 764 SMART LRR_typ_2 236 259 IPR003591 -
Apr1g0278 764 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Apr1g0278 764 Gene3D Phosphorylase Kinase; domain 1 445 563 - -
Apr1g0278 764 Gene3D Transferase(Phosphotransferase) domain 1 565 763 - -
Apr1g0278 764 Gene3D Ribonuclease Inhibitor 259 389 IPR032675 -
Apr1g0278 764 SUPERFAMILY Protein kinase-like (PK-like) 466 747 IPR011009 -
Apr1g0278 764 SUPERFAMILY L domain-like 29 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0278 Apr-Chr1 3251633 3256659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0278 9 694 Miscellaneous Gene Families AT5G14210 49.356 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Apr1g0278 PK_Tyr_Ser-Thr 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0278 - - gmx:100802978 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0278 1 3251633 3256659 Apr1g0278 1 3251633 3256659 ECH