Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g0265 | ATGGCGGCTGCAGCGGTGGCGGAGGGGAGAAAGGCCCCACGGCCGGGCAGGGGAGGGTTCGAAGCCCACGGTCTCAGCGAGGAGGAAGCGCGTGTGCGAGCTATCGCGGAGATCGTCAACTCGATGGTCGACCTCTCTCACAAAGGCCAAAACGTCGATCTCAACGCGCTTAAATCCGCCGCGTGCCGCAAGTACGGCCTCTCACGCGCCCCCAAGCTCGTCGAGATGATCGCCGCTCTCCCCGACTCCGAACGCCAAACCCTCCTCCCCAAGCTCCGAGCCAAACCCGTCCGAACCGCCTCCGGAATCGCCGTCGTCGCCGTCATGTCCAAGCCTCACCGTTGCCCTCACATCGCCACCACTGGCAACATTTGCGTGTACTGTCCCGGTGGTCCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACCGGTTACGAACCAACGAGTATGCGTGCGATTCGTGCAAGGTATAATCCATATGTCCAAGCAAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGACAAGGTTGAGTTCATCTTAATGGGTGGTACTTTCATGTCACTTCCAGCTGATTACCGTGATTACTTCATAAGAAATCTTCATGATGCTTTGTCTGGACACACGTCTGCCAATGTGGAAGAGGCAGTGGCGTACTCTGAGCATAGTTCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGACAAATGCTTTCTTATGGTTGTACACGACTGGAGATTGGAGTCCAAAGCACTTATGAGGATGTTGCCCGTGACACTAATAGAGGGCACACTGTAGCTGCCGTAGCTGATTGTTTTTGCTTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCCGATCTTCCAAATGTCGGTGTTGAGAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGCCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACTCTTGTGATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCCGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGAATCCTTGCAATGGTACCTCCATGGACACGTGTATATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAGGGGAACCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGAACTAGAGAAGCCGGAATCCAGGATATTCACCACCAAATTAGGCCAGAAGAGGTGGAACTTGTTCGTCGTGATTACATGGCAAATGAGGGTTGGGAAACATTTCTATCGTATGAAGATACACGACAGGATATCCTTGTTGGTCTGTTGCGACTGCGAAAATGTGGCCGTAACACTACTTGTCCTGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCACGTCTATGGAACTGCTGTACCAGTCCACGGACGGGATGCTGACAAGCTACAACATCAGGGTTACGGTACACTTCTAATGGAGGAGGCAGAGCGTATTGCTAGCAGAGAACACAGATCAACTAAAATGGCTGTAATTTCAGGGGTTGGCACACGTCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGTAA | 1692 | 0.5024 | MAAAAVAEGRKAPRPGRGGFEAHGLSEEEARVRAIAEIVNSMVDLSHKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDSERQTLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSSTKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIASREHRSTKMAVISGVGTRHYYRKLGYELEGPYMVKYLV* | 564 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g0265 | 563 | SFLD | elongater protein-like | 53 | 562 | - | - | |
| Apr1g0265 | 563 | SFLD | ELP3-like | 53 | 562 | IPR034687 | - | |
| Apr1g0265 | 563 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 371 | 558 | IPR016181 | - | |
| Apr1g0265 | 563 | Pfam | Acetyltransferase (GNAT) family | 415 | 551 | IPR000182 | GO:0016407 | |
| Apr1g0265 | 563 | Gene3D | - | 414 | 563 | - | - | |
| Apr1g0265 | 563 | Pfam | Radical SAM superfamily | 123 | 311 | IPR007197 | GO:0003824|GO:0051536 | |
| Apr1g0265 | 563 | SUPERFAMILY | Radical SAM enzymes | 135 | 374 | - | - | |
| Apr1g0265 | 563 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Apr1g0265 | 563 | ProSiteProfiles | Radical SAM core domain profile. | 98 | 388 | IPR007197 | GO:0003824|GO:0051536 | |
| Apr1g0265 | 563 | SMART | MiaB | 105 | 367 | IPR006638 | GO:0003824|GO:0051536 | |
| Apr1g0265 | 563 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 412 | 563 | IPR000182 | GO:0016407 | |
| Apr1g0265 | 563 | CDD | Radical_SAM | 112 | 359 | - | - | |
| Apr1g0265 | 563 | PANTHER | HISTONE ACETYLTRANSFERASE-RELATED | 2 | 562 | IPR039661 | - | |
| Apr1g0265 | 563 | Pfam | Radical_SAM C-terminal domain | 329 | 408 | IPR032432 | - | |
| Apr1g0265 | 563 | TIGRFAM | ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family | 50 | 562 | IPR034687 | - | |
| Apr1g0265 | 563 | PIRSF | HAT_Elp3 | 20 | 563 | IPR034687 | - | |
| Apr1g0265 | 563 | PANTHER | ELONGATOR COMPLEX PROTEIN 3 | 2 | 562 | IPR034687 | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | GNAT | Apr1g0265 | Radical_SAM | 2.7e-17 | CL0036 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g0265 | K07739 | - | gmx:100818764 | 1117.45 |
Event-related genes