Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0260 ATGGAGCCCTTTGAATCCGAATCAGTTTCTTCCTCCGCCAAAGACCCTCAATTGGGTGAACCTTCTTCCCCTCTTTCCCACCACGATCACGATCACGATCCTCAAGCCCCAGATCTCAATCACCTTAATCAGGTTGACGAAGCGCTTGTGGGGGAGATTCAGAACAAGTTGGATTTGAAGGATGGGGGTGAAACTGATGATAAAGGTTCGAACTTTGTAGCTGGGGGTGAACAGTTGTGTACTGAAGTTGCTGAGCCAGAAGATGGTAAGGGACAGGGGTTTGATGATGATGGTGATGGTGATGATGGTTGGAATGGTGGTGACGAGGGGTGTAATTGGATTGAGAATGTGAATGAGAGTGGGAGTGATAAGGTGGGTGGAGATGTTGATGGAGTGGAGAACAAGGATGAGAGAAACAGTGGTAGAACACAACAGTACCCGTTGAGGCCTGAAGCTGAAGACTGTGCATTTTATCTCAAAACTGGGACTTGTAAATTTGGATTCAATTGCAAGTTCAATCATCCCGTTAGGAGGACGAACCAGGCTATGAAAGAGAATGCGGGGGAAAGAGATGAACCTGCTGAAAGATCAGGCCAGACAGAATGCAAGTATTATCTAAGGTCTGGGGGATGCAAGTTTGGAAAAGCTTGTAAGTTTAACCACACAAGAGGAAAGTGTACAGCATCTCCAATTGTAGAGCTTAACTTCCTTGGCTTGCCTATTCGTGTGGGAGAGAAAGAGTGTGTCTATTACATGCGCACTGGCTCTTGTAAGTTTGGGGCAAATTGCAAGTTTAATCATCCTGATCCTACAACTGTTGGAGGATGTGATTCTCCTTCAGGGTATAGTAATGGAACTTCTATTTCATTACAAGGTGTATCACAATCATCTATTCCCTCGTGGTCTTCTACTAGAACATTAAATGAATCTGCTCCTTTGGTGCCAATGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAATTCTGAATGGAATGGATATCAGGCGCCTGTTTATCTATCTGAGAGGACTCTTCACCCTCCTTCGACATATGTCATGAACAACCCAGCTATGGAAACAAACGTTTATATGCACCATCAAAATCAAATGCCAGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGAGATTGCAAGTTTAAATCTAATTGTAAATTTCATCATCCCAAGAATCGGATTGCAAGGTTACCTCCATGCAACCTCAGTGACAAGGGTCTACCATTGAGACCAGACCAGAATGTTTGCACGCATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCCATAAACCCACCACCCTCATCTATGCCTGGACTTGATCAACAATCCTCTTTCACAAACTCAGCAAGTGTTGAAGTGGCTGAGATGGGTGCAAATGGAGGTGCCAGTGATGCAAATCAGCAGTCTGTGTAA 1479 0.4442 MEPFESESVSSSAKDPQLGEPSSPLSHHDHDHDPQAPDLNHLNQVDEALVGEIQNKLDLKDGGETDDKGSNFVAGGEQLCTEVAEPEDGKGQGFDDDGDGDDGWNGGDEGCNWIENVNESGSDKVGGDVDGVENKDERNSGRTQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPVRRTNQAMKENAGERDEPAERSGQTECKYYLRSGGCKFGKACKFNHTRGKCTASPIVELNFLGLPIRVGEKECVYYMRTGSCKFGANCKFNHPDPTTVGGCDSPSGYSNGTSISLQGVSQSSIPSWSSTRTLNESAPLVPMILSPNPGVSPQNSEWNGYQAPVYLSERTLHPPSTYVMNNPAMETNVYMHHQNQMPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPSSMPGLDQQSSFTNSASVEVAEMGANGGASDANQQSV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0260 492 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Apr1g0260 492 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Apr1g0260 492 MobiDBLite consensus disorder prediction 53 67 - -
Apr1g0260 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Apr1g0260 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 427 450 IPR000571 GO:0046872
Apr1g0260 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Apr1g0260 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 268 IPR000571 GO:0046872
Apr1g0260 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 405 IPR000571 GO:0046872
Apr1g0260 492 SUPERFAMILY CCCH zinc finger 148 178 IPR036855 GO:0046872
Apr1g0260 492 SUPERFAMILY CCCH zinc finger 243 269 IPR036855 GO:0046872
Apr1g0260 492 ProSiteProfiles Zinc finger C3H1-type profile. 424 452 IPR000571 GO:0046872
Apr1g0260 492 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 492 - -
Apr1g0260 492 Gene3D - 424 475 - -
Apr1g0260 492 Gene3D - 345 416 - -
Apr1g0260 492 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Apr1g0260 492 SMART c3hfinal6 244 269 IPR000571 GO:0046872
Apr1g0260 492 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Apr1g0260 492 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Apr1g0260 492 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Apr1g0260 492 SMART c3hfinal6 424 451 IPR000571 GO:0046872
Apr1g0260 492 MobiDBLite consensus disorder prediction 1 19 - -
Apr1g0260 492 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Apr1g0260 492 MobiDBLite consensus disorder prediction 458 475 - -
Apr1g0260 492 Gene3D - 186 273 - -
Apr1g0260 492 PANTHER PROTEIN PHOSPHATASE RELATED 11 492 - -
Apr1g0260 492 MobiDBLite consensus disorder prediction 453 492 - -
Apr1g0260 492 Gene3D - 125 185 - -
Apr1g0260 492 MobiDBLite consensus disorder prediction 126 142 - -
Apr1g0260 492 MobiDBLite consensus disorder prediction 1 145 - -
Apr1g0260 492 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Apr1g0260 492 SUPERFAMILY CCCH zinc finger 422 450 IPR036855 GO:0046872
Apr1g0260 492 SUPERFAMILY CCCH zinc finger 200 225 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0260 Apr-Chr1 2902736 2908730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0260 374 476 C2H2 Transcription Factor Family AT3G02830 44.660 1.95e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g0260 zf-CCCH 1.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0260 - - gmx:100776363 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0260 1 2902736 2908730 Apr1g0260 1 2902736 2908730 ECH
Apr10g1466 10 27098133 27102389 Apr1g0260 1 2902736 2908730 PCT