Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0259 ATGGGGGCTTCAGAGGGAAACGGCGACGTTTTACCATGGCTGAAATCACTACCGGTGGCTCCGGAGTACAGGCCAAGCGTGGCCGAGTTCAGAGATCCAATTGGCTACATATTCAAGATAGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCACCCTTCCCACCTTCCCCAAAGAAAACCGCCATCGCCAACCTCAACCGGTCGCTGGCGGTTACAGGTTCCACATTCACCACTCGCCAACAGCAGATCGGGTTTTGCCCCCGCAAAGCCCGGCCCGTTCGGCGGTCTGTTTGGCAGAGCGGTGATCATTACACCTTCCACGAGTTCGAGTCCAAGGCAAAGTCCTTCGAGAAAAATTACCTCAAACGCCACACCAAGAAGGGCCCGGGCCCAGGCCCACTGGAAACCGAGACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAGTACGCCAACGACATGCCCGGTTCTGCGTTCTCCCCGAAATGCTGCGAAGCAGGGGATCCTGGCTCCTCTCTGGCTGACACTCCATGGAACATGAGAGAGGTTTCAAGGGCGAATGGTTCACTCTTACGGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCTATGGTGTATGTGGCCATGCTTTTCAGCTGGTTTGCTTGGCACGTGGAGGACCACGACTTGCACAGCTTGAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGAGTTCCTCGTGATGCCGCCGTTGCATTTGAGGAAGTAGTTAGGGTTCATGGCTATGGTGGAGAGATAAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACAACAGTGATGTCGCCTGAAGTGTTTATTAGAGCAGGTGTTCCATGCTGCAGGTTGGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCTAGAGCCTATCACACTGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCCCATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTACAAGCATCAATGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTTATTAAAGAACTTTTTGTCCAGGATGTGTTACAGAGCAATGATTTGCTTCATATACTTGGGAAAGAATCTGCTGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGAGTTGGATCCCAACAATCCATCAATGTAAGCAATTCTGAGGGAATGAATTCCTCGAAAGGTTTTGTTTCAGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAATATTCTATTCTGTGAAAGACAAGTTTACTACATTGTGTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATATGCACTTCAAGTTCTAAGCCACTTCAAAGAAACACTGGCAGAGAAACTAGTCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCATGCGTTACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCAAAAGAACCTGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGATCTGGAGTATCTTGTAGTAAATTTGCTTTTTCCCATGAAGACAAAACTATACCTGAGCCAAATACGTATACAGGTTGGATGAAAAAAAATGACCAAGATGGTTTTGATGACTTTCCTGTTCAATCTGGTCAGGATGCTTTAAGTACTGAAAGAGAGAGAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTGACTCTGAGGAAGATCAGGGTGACCCAGATATTGCAGTTGACAGTCATGAATCAAATGTGATAAACTCAAATTCAGGAAGATTACTTTCTCTTACTCCAGATTTCCATGCTAGTCCCATGACTGCACTTGATAGGGTAGATGATATTCCTTCAAAGAGTGTCAATTATGAGGATCATATGCATCACAGATTTGAGTGTAATTTGAGTCATGAGTCTTTTGACCACTCTTCCAAGAAACAAGATTATGATGTCACTTCAGGATTTACATTTAAAAATACGAGGACAGTGCCTAATTCCACCTCTAACTGTTCCCAAGATTCTCATGATGCTGAAAGGTCATTGTCTGTCAACCCTGTAGTTCCCATTGATAATAAAAATGTTTCGTTGGTACCAAAATCTGATGAAGACTCGACTAGAATGCATATTTTTTGTCTAGAGCATGCTGTGGAAGCAGAGCTGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTGCTTTGTCATCCAGATTATCCAAAAATAGAGGCTGAGGCAAAATTGGTGGGAGAAGATTTGGGGATTGATTACACATGGAAGAATATTGCATACAGGCATGCCACCAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTAATATACTATGCATTTGGTCGTAGCTCTCCAACAAGCTCACCCATTGAACCAAAGGTCTATCAGAGAAGGTCCAGCAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGATTCATCCCCTTTTAGCAAAAAAAGATTCTGATGATTTTGAGGATGAGAAAAGATTACATGGATGGATATTACCTGATGAGAAAATTGAAAGACCAGAAAGTAACCCCAAAAGTGAAACTACTAGCAGAAAATCTGGTAGGAAAAGGAAAATAACAGGGGAAAGTGCACGGACCAGGAAAGGAAGTCTTGCCAAGAAAAATATAGCTTCAGATAATTCCACTGAAGATAAACCCAACTCTCAGCCAAGGAGGATTCTTAGAAGTAAGAAAAGCAGGTGTGTTGAGAGAGATCGTGCTGCTTTGGAAGTGGGTTATGCTCCTCCACATCATCGTAGAAAACCTATAAGGAAGCAAACAAAGTGCAGTGAAAGTGATGCAGCTTCTTATGATTCACTTAATGATAATGATCATATGCAGCATTGGAGAAATGATATTGTTGGAAAAACTAAATTTATTGACAATGATGTAGTTTCAAATGATACAGTGAACTATGATTCTGACTGGCAGCAGATGGGAGAACTTAGCCGCAAGCAAGTTGAAGACACAGACAGAGATGCAATTTCAGAGGATTCTTTGGGTGTTGGTTCTCTTCAGCTGCGTAGGAAGACTTCTAAAGGCAAGCATGCCAAAAACATTGGTCAAGAAGATATAATTTCTGATGACCAAATGGAGAATCTTTCTCAAAAGGGGAAAAGGAAAATTCCTAAAAGCAGGCATGACAAATATCTAGCTGGAAAAGATGTAATGATATCTGATGACCAACTGGAGCTGAAAATGCAGAAGCAGCAACAAAGGAATCCTAAAAGCAGACAAGCCAAATACCTTGCTGAAGAGGATATTGTATCAGATGACCAACTGGAGGGCTATTATCGGAAATATCAAAGAAGGGCTCCTAAAGGCAAGCAGGCGAAATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATCAGAAGATAACTGTCAGAGGCAGCAAACCAGTTTTTCTGGGAAAAGACAATATAAAGGCATTGACAGAGAAGTTAAAAATGTGATTTCTGATGACCAATTGTTGGATCATTTTCAGAAGCAGCAGAGAAAATTTTCCAAGAGCAGGCAAAACAAACACATTAATGAAGAAGTTATGGATGACTCAGCTGACAATAATTCTCATCTGCTGCGTAGAACTCCTAAAAGGAGGCAAGCTAAATGCATGGACGAAGATGATATAAATTCAGATGATGAAATGGAAGATGATTCTCATCAGCCGCCAATGAGAGCTCTTCGAAGTAAACAATCCAAAGCAAAGACACTTCAACAGATGAAACAAGCTAAATCCATCCAAGTGAAAAACCGGACATCTCGGCGGGGGGCTCGGGTGCTTATGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCAGAACAAGCAATCTAGTAACTCCAGAGAATTTAGTTTATATATGGAAGAGGAGGAGGAAGGTGGACCTAGCACACGCCTTAGGAAGAGATCAGCAAAAGCTCAGGAGTCTGAAGGAAAAGTAAAAGACAAGCAAACCAAAAGGAAAAGGGTGAAGAATGCCACAGCTGCTGCAAAGGTTTCAGCTGGGCATGCCAAAGTGAAGGATGAGGAAGCAGAATACCAGTGTGACATTGAGGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTTAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTAGTGCAGCACCGCCGGGTTCATGAGGATGACCGTCCCTTGAAGTGCCCTTGGAAGGGGTGCAAAATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCTGAGCCAGGTTGTGGTCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTCAATAG 4785 0.4334 MGASEGNGDVLPWLKSLPVAPEYRPSVAEFRDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVTGSTFTTRQQQIGFCPRKARPVRRSVWQSGDHYTFHEFESKAKSFEKNYLKRHTKKGPGPGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCCEAGDPGSSLADTPWNMREVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFIRAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPTSINAEPRSSRLKDKKKGEGETVIKELFVQDVLQSNDLLHILGKESAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMNSSKGFVSDDLVFNRSHGIKQEKIFYSVKDKFTTLCERNRISSFDVNGNICTSSSKPLQRNTGRETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPKEPAARYLMSADCSFFNDWVVGSGVSCSKFAFSHEDKTIPEPNTYTGWMKKNDQDGFDDFPVQSGQDALSTERERGNTALALLASAYGNSDSEEDQGDPDIAVDSHESNVINSNSGRLLSLTPDFHASPMTALDRVDDIPSKSVNYEDHMHHRFECNLSHESFDHSSKKQDYDVTSGFTFKNTRTVPNSTSNCSQDSHDAERSLSVNPVVPIDNKNVSLVPKSDEDSTRMHIFCLEHAVEAELQLRPIGGAHILLLCHPDYPKIEAEAKLVGEDLGIDYTWKNIAYRHATKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPTSSPIEPKVYQRRSSKQKKVVAGKWCGKVWMSNQIHPLLAKKDSDDFEDEKRLHGWILPDEKIERPESNPKSETTSRKSGRKRKITGESARTRKGSLAKKNIASDNSTEDKPNSQPRRILRSKKSRCVERDRAALEVGYAPPHHRRKPIRKQTKCSESDAASYDSLNDNDHMQHWRNDIVGKTKFIDNDVVSNDTVNYDSDWQQMGELSRKQVEDTDRDAISEDSLGVGSLQLRRKTSKGKHAKNIGQEDIISDDQMENLSQKGKRKIPKSRHDKYLAGKDVMISDDQLELKMQKQQQRNPKSRQAKYLAEEDIVSDDQLEGYYRKYQRRAPKGKQAKCVAGEDEMSDDQSEDNCQRQQTSFSGKRQYKGIDREVKNVISDDQLLDHFQKQQRKFSKSRQNKHINEEVMDDSADNNSHLLRRTPKRRQAKCMDEDDINSDDEMEDDSHQPPMRALRSKQSKAKTLQQMKQAKSIQVKNRTSRRGARVLMKSKAPQQIKQPSHLQNKQSSNSREFSLYMEEEEEGGPSTRLRKRSAKAQESEGKVKDKQTKRKRVKNATAAAKVSAGHAKVKDEEAEYQCDIEGCTMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ* 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1290 1335 - -
Apr1g0259 1594 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Apr1g0259 1594 SUPERFAMILY Clavaminate synthase-like 98 361 - -
Apr1g0259 1594 Pfam JmjC domain, hydroxylase 211 329 IPR003347 -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1230 1269 - -
Apr1g0259 1594 Pfam jmjN domain 21 54 IPR003349 -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1012 1044 - -
Apr1g0259 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1525 IPR013087 -
Apr1g0259 1594 SUPERFAMILY beta-beta-alpha zinc fingers 1541 1585 IPR036236 -
Apr1g0259 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1563 1587 IPR013087 -
Apr1g0259 1594 SMART c2h2final6 1501 1525 IPR013087 -
Apr1g0259 1594 SMART c2h2final6 1561 1587 IPR013087 -
Apr1g0259 1594 SMART c2h2final6 1531 1555 IPR013087 -
Apr1g0259 1594 SMART c2h2final6 1478 1500 IPR013087 -
Apr1g0259 1594 Gene3D Classic Zinc Finger 1499 1585 - -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1290 1461 - -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1416 1448 - -
Apr1g0259 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1530 IPR013087 -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 962 1065 - -
Apr1g0259 1594 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1149 - -
Apr1g0259 1594 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1262 1584 - -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 962 996 - -
Apr1g0259 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1561 1592 IPR013087 -
Apr1g0259 1594 ProSiteProfiles Zinc finger C2H2 type domain profile. 1531 1560 IPR013087 -
Apr1g0259 1594 ProSiteProfiles JmjC domain profile. 178 347 IPR003347 -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1360 1381 - -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1395 1415 - -
Apr1g0259 1594 Gene3D Cupin 13 351 - -
Apr1g0259 1594 SMART cupin_9 178 347 IPR003347 -
Apr1g0259 1594 ProSitePatterns Zinc finger C2H2 type domain signature. 1533 1555 IPR013087 -
Apr1g0259 1594 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1149 - -
Apr1g0259 1594 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1262 1584 - -
Apr1g0259 1594 MobiDBLite consensus disorder prediction 1154 1174 - -
Apr1g0259 1594 SMART JmjN_1 19 60 IPR003349 -
Apr1g0259 1594 SUPERFAMILY beta-beta-alpha zinc fingers 1501 1537 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0259 Apr-Chr1 2884373 2894152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0259 771 879 C2H2 Transcription Factor Family AT5G04240 32.110 1.95e-14 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g0259 JmjC 1.8e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0259 - - gmx:100775271 2565.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0259 1 2884373 2894152 Apr1g0259 1 2884373 2894152 ECH