Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0258 ATGGGGGCTTCAGAGGGAAACGGCGACGTTTTACCATGGCTGAAATCACTACCGGTGGCGCCGGAGTACAGGCCAAGCGTGGCCGAGTTCAGAGATCCAATTGGCTACATATTCAAGATAGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCACCCTTCCCACCTTCCCCAAAGAAAACCGCCATCGCCAACCTCAACCGGTCGCTGGCGGTTACAGGTTCCACATTCACCACTCGCCAACAGCAGATCGGGTTTTGCCCCCGTAAGGCTCGACCTGTTCAGCGGCCTGTTTGGCAGAGCGGTGACCATTACACCTTTCACGAGTTCGAGTCCAAGGCAAAGTCTTTCGAGAAAACTTACCTCAAACGCCACACCAAGAAGGGCCAGGGCCCAGGCCCACTCGAAACCGAGGCACTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAGTATGCGAACGACATGCCTGGTTCCGCGTTCTCCCCAAAATGCCCCGAAGCAGGGGATCCTGGCTCCTCTCTGGCTGACACTCCGTGGAACATGAGAGAGGTTTCGAGGGCGAATGGTTCACTCTTGCGGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCTATGGTGTATGTGGCCATGCTTTTCAGCTGGTTTGCTTGGCACGTGGAGGACCACGACTTGCACAGCTTGAATTACCTCCACATGGGCGCTGGCAAGACCTGGTATGGTGTTCCTCGTGATGCCGCCGTTGCATTTGAGGAAGTCGTTAGGGTTCATGGCTATGGTGGAGAGATAAACCCTCTTGTTACTTTTGCCATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGAGCAGGCGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCGAGAGCCTATCACACTGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAGTGGTTGAGGGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGATTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTATGTTCTAGAATCCCTGCGAGCATTGGTACTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGGAAAGAATCTGCTGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAATCCATCAATGTAAGCAATTCTGAGGAATTGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTTCTACATTGTGTGAAAGGAACAAAATTTCCTCTTTTGATGTAAATGGCAACATATGCGCTTCAACATATGCACTTCAAAGAGAAACTGAAAGAGAAACTAGTCAAGGAGATGGGTTTTCAGATCGGAGACTATTTTCATGTGTTACATGTGGAATATTAAGCTTTTCCAGTGTTGCTATTGTACAGCCAAAAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCGGGAGTATCTAGCAGTAAATTTACAATTGCCCATGAAGATACAACTATTCCTGAACCAAATTCGTATACAGGATGGATGAAAAAAAATGCCCAAGATGGTTTAGGTGCTTTTCCTGTTCAATCTGCTCAGGATGCTTCAAATACTGAAATAGAGAAAGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTGACTCTGAGGAAGATCAGGGTGACCCAGATATTGCAGTTGACAGTCATGAATCAAATGTGATAAACTCTAATTCAGGAAGATTACTTTCTCTTACTCCAGATTCCCATGCTAGTCCCATGACTGCACTTGATAGGGTAGATGATATTTCTTCAAAGAGTGCCAATTATGAGGATCATATGCATCATAGATTTGAGAGTATTTTAAGTCATGATTCTTTTGACCATTCTTCTAAGAAACAAGATTATGATGTCACTTCAGGATATACATTTAAAAATATCAGGACAGTGCCTAATTCCACCTCTAATTGTTCCCAAGATTCTCATGATGCTGAAAGGTCATTGTCTGTCAACCCGGTAGTTCCCATTGATAATAGAAGTGCTTCGTTGGTACCACAATCTGATGAAGACTCGTCTAGAATGCATATTTTTTGTCTAGAGCATGCTGTGGAAGCAGAGCTGCAACTTCGCCCAATAGGTGGAGCCCACATATTTTTGCTATGTCATCCAGATTATCCGAAGATTGAGGCTGAGGCAAAATTGGTGGCCGAAGATTTGGGGATTGATTACACATGGAAGAATATTGCATACAGGCATGCCACCAAAGAGGACGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTGAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTAATATACTATGCTTTTGGTCGTAGCTCTCCAACAAGCTCACCCATTGAACCAAAGGTCTATCAGAGAAGAGCCAGCAAGCAGAAAAAGGTGGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGATCCATCCCCTTTTAGCAACAAAAGATTCTGATGATGTTGAGGATGAAAAAAAATTACATGGGTGGATATTACCTGATGAGAAAATTGAGAGACCAGAAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAATCTGGTAGGAAAAGGAAAATGACATTGGAGAGTGCACGTACCAGGAAAGGAAGTTTTGCCAAGAAAAATATAGCATCAGATAATTCTACTGAAGATAAACCCATTTCTCAGCCAAGGAGGATTCTTAGAAGTAAGAAAGCCAGGTGTGTTGTGAGGCATCGCGCTGCTTTGGAAGGGGATTATGGTCCTCCACGTCATCATAGAAAACATAGAAGCAAGCAAACGAAGTGCAGTGAAAGTGATGCAGCTTCTGATGATTCACTTAATGATAATGTTCGAAAAACTAAATTTATTGAGAATGATGTAGTTTCAAATGATACGGTGGACTATGATTCTGATTGGCAGCAGAGGGAAGAACTTTGTGGCAAGCAAGTTGAAGACACAGAGAGAGAGGCAATTTCAGAGGATTCTATGGGTGTTGGTTCTCTTCAGCTGCATAGGAAGGCTTCTAAAGGCAAGCATGCCAAATACATTAGTGCAGAGGATATAATTTCTGATGATCAAATGGGGAATCTTTCTCAGAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCATGACAAGTATCATGCTGGAAAAGATATAATGATATCTGATGACCAACTGGAGCCAAAAATGCAGAAGCAGCAACGGAGAAATCCTAAAAGCAGGCAAGCCAAATACCTTGCTGAAGAGGAAATTGTATCAGATGACCAACTGGAGGGCTATTATCGCAAGTATCAAAGAAGGGCTCCTAAAGGCAGGCAGGCCAAATGTCTAGCAGGGGAAGATGAAATGTCTGATGACCAATCAGAAGATAACTTTCAGAGGCAGCAAACCAGTTTTTCTAGGAAAAGACAATATAAAGGCATTGACAGAGAAGTTAAAAATGTGATTTCTGATGACCAATTGTTGGATCATTTTCAGAAGCAGCAGAGAAAATTTCCCAAGAGCAGGCAAAACAAACACATTGATGAAGAAGTTATGGATGACTCGGCTGACAATAATTCTCATCTGCTGCGTAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGACGAAGATGATATAAATTCAGATGATGAAATGGAAGATGATTCTCATCAGCCGCCAATGAGAGCTCTTCGAAGTAAACAATCCAAAGCAAAGACACTTCAACAGATGAAACAAGCTAAATCCCTCCAAGTGAAAAACCGGACATCTCAGCCAGTAAAACGGGGGGCTCGGGGGCTTATGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCGGAACAAGCAATCTAGTAACTCCAGAGAATTTAGTTTATATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGATCAACAAAAGCTCAGGAGTCTGAAGGAAAATTAAAAGACAAGCAAACCAAAAGGAAAAGGGTGAAGAATGCTACAGCTGCTGCAAAGGTTTCAGCTGGGCATGCCAAAGTGAAGGATGAGGAAGCAGAATACCGGTGTGACATTGAGGGGTGCACTATGAGTTTCGGGTCAAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTTAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTAGTGCAGCACCGCCGGGTTCATGAGGATGACCGTCCCTTGAAGTGCCCTTGGAAGGGGTGCAAAATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCTGAGCCAGGTTGTGGTCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTCAATAG 4761 0.4369 MGASEGNGDVLPWLKSLPVAPEYRPSVAEFRDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVTGSTFTTRQQQIGFCPRKARPVQRPVWQSGDHYTFHEFESKAKSFEKTYLKRHTKKGQGPGPLETEALFWKATLDKPFSVEYANDMPGSAFSPKCPEAGDPGSSLADTPWNMREVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFIRAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMISHFQLLYDLALALCSRIPASIGTEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKESAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEELNSSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFSTLCERNKISSFDVNGNICASTYALQRETERETSQGDGFSDRRLFSCVTCGILSFSSVAIVQPKEPAARYLMSADCSFFNDWVVGSGVSSSKFTIAHEDTTIPEPNSYTGWMKKNAQDGLGAFPVQSAQDASNTEIEKGNTALALLASAYGNSDSEEDQGDPDIAVDSHESNVINSNSGRLLSLTPDSHASPMTALDRVDDISSKSANYEDHMHHRFESILSHDSFDHSSKKQDYDVTSGYTFKNIRTVPNSTSNCSQDSHDAERSLSVNPVVPIDNRSASLVPQSDEDSSRMHIFCLEHAVEAELQLRPIGGAHIFLLCHPDYPKIEAEAKLVAEDLGIDYTWKNIAYRHATKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPTSSPIEPKVYQRRASKQKKVVAGKWCGKVWMSNQIHPLLATKDSDDVEDEKKLHGWILPDEKIERPESTPKSETTSRKSGRKRKMTLESARTRKGSFAKKNIASDNSTEDKPISQPRRILRSKKARCVVRHRAALEGDYGPPRHHRKHRSKQTKCSESDAASDDSLNDNVRKTKFIENDVVSNDTVDYDSDWQQREELCGKQVEDTEREAISEDSMGVGSLQLHRKASKGKHAKYISAEDIISDDQMGNLSQKRQRRIPKSRHDKYHAGKDIMISDDQLEPKMQKQQRRNPKSRQAKYLAEEEIVSDDQLEGYYRKYQRRAPKGRQAKCLAGEDEMSDDQSEDNFQRQQTSFSRKRQYKGIDREVKNVISDDQLLDHFQKQQRKFPKSRQNKHIDEEVMDDSADNNSHLLRRTPKRKQAKCMDEDDINSDDEMEDDSHQPPMRALRSKQSKAKTLQQMKQAKSLQVKNRTSQPVKRGARGLMKSKAPQQIKQPSHLRNKQSSNSREFSLYMEEEEEGGPSTRLRKRSTKAQESEGKLKDKQTKRKRVKNATAAAKVSAGHAKVKDEEAEYRCDIEGCTMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ* 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1280 1324 - -
Apr1g0258 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1555 1579 IPR013087 -
Apr1g0258 1586 SMART c2h2final6 1553 1579 IPR013087 -
Apr1g0258 1586 SMART c2h2final6 1470 1492 IPR013087 -
Apr1g0258 1586 SMART c2h2final6 1523 1547 IPR013087 -
Apr1g0258 1586 SMART c2h2final6 1493 1517 IPR013087 -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1169 1187 - -
Apr1g0258 1586 Gene3D Classic Zinc Finger 1491 1577 - -
Apr1g0258 1586 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1169 1197 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 734 754 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1220 1258 - -
Apr1g0258 1586 SUPERFAMILY beta-beta-alpha zinc fingers 1533 1577 IPR036236 -
Apr1g0258 1586 Gene3D Cupin 13 351 - -
Apr1g0258 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1495 1517 IPR013087 -
Apr1g0258 1586 SUPERFAMILY Clavaminate synthase-like 103 364 - -
Apr1g0258 1586 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1576 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1349 1372 - -
Apr1g0258 1586 Coils Coil 1430 1450 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1408 1440 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 958 1066 - -
Apr1g0258 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1525 1547 IPR013087 -
Apr1g0258 1586 SUPERFAMILY beta-beta-alpha zinc fingers 1493 1529 IPR036236 -
Apr1g0258 1586 ProSiteProfiles JmjC domain profile. 178 347 IPR003347 -
Apr1g0258 1586 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1576 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1387 1407 - -
Apr1g0258 1586 Pfam JmjC domain, hydroxylase 211 329 IPR003347 -
Apr1g0258 1586 SMART cupin_9 178 347 IPR003347 -
Apr1g0258 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1523 1552 IPR013087 -
Apr1g0258 1586 Pfam jmjN domain 21 54 IPR003349 -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1280 1453 - -
Apr1g0258 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1493 1522 IPR013087 -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 734 750 - -
Apr1g0258 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1553 1584 IPR013087 -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 1029 1043 - -
Apr1g0258 1586 MobiDBLite consensus disorder prediction 958 995 - -
Apr1g0258 1586 SMART JmjN_1 19 60 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0258 Apr-Chr1 2848118 2857304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0258 777 878 C2H2 Transcription Factor Family AT5G04240 33.333 1.88e-14 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g0258 JmjC 1.8e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0258 - - gmx:100775271 2543.46