Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0252 ATGATGGATGGGCGGCGGCATTCAGTTGATATTCCAATTTCTAAAACACTTGTGGCATTGAGGAGAGTCAGGTCATTGAGGGATCCATCAACTAATTCTATGAGTAAACTTTCTCATTTGATTGATAATGTGCACTGGGAAAACGGTTCCGGTAATGGGATTTCCTTGCGGTTTTCAGATGCTACTCGTGCGTGTGATTCTGATGATAATGTTACTTTCAGATCAAGGAATTTAGGTTTTAAGGAACAAAGGGAGCAGGGTGATGCTGATTTTGTATTGAATTGTGGTCATTTGAACTCAAGGCTGAAGCCTAGTGGGGTACCATGTCAGGATGGCCAACATGATGATGAACTAGTTTACTGTAATCCTAATCAGCAAAGCATTTCTGGAAATAAGTCCCCTAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGGTTGGATTTGCCTTGTACCATGCCTCCCAGTAATCATTTCAGGGATGGGCATTCATGCTATGTTGCTACTGCTAGATCATCTCAATTAGGGAGAATAGATTACTCTAAGTCAGCCAAAAAATCTCTACGCAAGAATCAAGTAAAACCATCAGAGGTAGTGGGTGGAATTGCCAGCCATTTAGGCAGTCCATGCCTTTCTGTTCGCGATGCTTTCTCGCCCCATAGTGCCTTAGTAGGTATTAATCAAGATGTTTTTGAAAATATTGATAGTGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAGTCAAATCTTAATTGTGAGATTGAAGACCGTCCCTTGATATTGCACGGTGTTGATGAGACAGATATTCATGGACATAGAAGCATGAGACACAATGGTGGTGGAATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGACCTAAATCATTTAGTGATTTGGTGGGGCAAAATGTGGTTGTAAGGTCCCTTTTGGGTGCCATCTCCAGAGGAAGGATAACGTCATTTTATCTCTTCCATGGTCCACGTGGTACTGGCAAGACATCTGCCTCCAGGATATTTGCTGCTGCACTAAATTGCCTCTCTTTTGAGGAGCGAAGGCCATGTGGCCTATGTAGAGAATGCGTTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAAGAAGTGGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTCCTCACGTTTTAAGGTCTTTATTATTGATGAGTGCCAGTTATTGAATGGGGAGACATGGGCAAGCCTTTCAAATAGTCTACAGAACCTTTCTCAACATGTGGTTTTTGTGATGATTACTCCTGATTTGGACAAGCTTCCTAGAAGTGCAGTTTCTCGGGCTCAGAGGTATCACTTTCCAAAGATTAAAGACGCTGACATTGTGTGCAGATTAGAAAAAATTTGTGCCGAAGAAGGTCTTGATTTTGAACAGGCTGCTTTGGACTTCATTGCTGCAAAATCTTGTGGTTCTGTTAGGGATGCAGAAATGATGCTAGATCAGCTCAGTTTGCTTGGAAAAAAGATCGATATTTCCTTAGTGTACGAGCTTACCGGGATTGTTTCTGATGATGAGTTGCTCGACTTGCTGGATCTAGCATTGTCATCTGACACTTCAAATACAGTTATAAGAGCTCGGCAGCTTATGAGATCAAGGATAGATCCTTTGCAGCTTATATCACAGCTGGCAAATCTTGTTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAAATAGATTTTCTGGTAGATATACCTCGGAAGCAGACCTGCAGAAACTCAACAATGCATTGAGAATACTTTCTGAAACTGAGAAGCAGTTAAGAATCTCAAAGAATCAAACAACGTGGTTCACTGTAGCCCTCTTACAGCTAAGCTCTGTAGATTATCCATCTGTGGATGCCAACGATACCAAATTAAGTTTGAGAGTTCCATGCAATGGAGAATTTGATATCCGCAATATATCATCTACAGGGCAGAGCTTGGAGCATCTTGCTACTGGTCAGTGTGATAACAAGTCATACAGATTACGAGTGCAGGAGGATCGCCGGGGAACATTGAATTCCATTTGGTATAAAGCTACAGAATTGTGTCAATCTAGTCGGCTCAAGACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCAATACAGCTTGCCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCTAAAGCTGAGAAGTCATGGAAATTGATCGCAAGATCCTTGCAGTTCATATTGGGCTGTAACATTGAGTTGAGGATCACTTACATACCATGTGCTTCTGATTCTAAGTATGCCAAACTGAAGAGGGCATCTTTCAGCATCTTCAGTTGTTCACGCAAAATTCGACGACGGAAATCATCATCTTTTAATGAACAAGGAAGTGAATCAGATTATGCTGATTGCACCTCTCAAAATCCCATGATGAAGGATAAAACAACTTCCTCTGATTGTGGAGTGGATGTTGTAACGACTTTGCGAAGTTGTGAAGGGAATTTGCTTAGCTCAGGAGAAAGGTTTTTAAATAGGTCATTTCAAGAGCCTCTGGAGACATCATGTGCTATAGTCGATTCCTCTAAGGAAGAGGAATGCAATTGTGCTCATCTAGATTCATCAATCCCCAGTTCAGATAATCACTCTTACTGTTTTCCTCAAACTATTTGGCTTCAAAAGAAGTTTCGTTCATCAAATTCATTCAAGATGACTTTTCAGGGTATTCAACAACAGAAAGATTTTGTTTTATCTACCCCTAAGTGTACATGA 2844 0.4107 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSHLIDNVHWENGSGNGISLRFSDATRACDSDDNVTFRSRNLGFKEQREQGDADFVLNCGHLNSRLKPSGVPCQDGQHDDELVYCNPNQQSISGNKSPSESCGSNHGGKGLDLPCTMPPSNHFRDGHSCYVATARSSQLGRIDYSKSAKKSLRKNQVKPSEVVGGIASHLGSPCLSVRDAFSPHSALVGINQDVFENIDSGCGISCCWSKSPRFRESNLNCEIEDRPLILHGVDETDIHGHRSMRHNGGGISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALNCLSFEERRPCGLCRECVLFFSGRSKDVKEVDSVRINRTDQVKSLVKNACIPPVSSRFKVFIIDECQLLNGETWASLSNSLQNLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKIKDADIVCRLEKICAEEGLDFEQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIDISLVYELTGIVSDDELLDLLDLALSSDTSNTVIRARQLMRSRIDPLQLISQLANLVMDILAGKCENGGSEVRNRFSGRYTSEADLQKLNNALRILSETEKQLRISKNQTTWFTVALLQLSSVDYPSVDANDTKLSLRVPCNGEFDIRNISSTGQSLEHLATGQCDNKSYRLRVQEDRRGTLNSIWYKATELCQSSRLKTFLRKKGKLSSLHVDRNTACLAIAELEFHHRHHVSKAEKSWKLIARSLQFILGCNIELRITYIPCASDSKYAKLKRASFSIFSCSRKIRRRKSSSFNEQGSESDYADCTSQNPMMKDKTTSSDCGVDVVTTLRSCEGNLLSSGERFLNRSFQEPLETSCAIVDSSKEEECNCAHLDSSIPSSDNHSYCFPQTIWLQKKFRSSNSFKMTFQGIQQQKDFVLSTPKCT* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0252 947 Gene3D - 290 467 IPR027417 -
Apr1g0252 947 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 946 - -
Apr1g0252 947 MobiDBLite consensus disorder prediction 815 840 - -
Apr1g0252 947 CDD HLD_clamp_pol_III_gamma_tau 469 532 IPR045085 -
Apr1g0252 947 MobiDBLite consensus disorder prediction 819 840 - -
Apr1g0252 947 CDD AAA 310 460 - -
Apr1g0252 947 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 296 642 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Apr1g0252 947 Gene3D - 533 646 - -
Apr1g0252 947 Pfam DNA polymerase III, delta subunit 312 469 - -
Apr1g0252 947 Gene3D - 470 532 - -
Apr1g0252 947 Coils Coil 608 631 - -
Apr1g0252 947 SUPERFAMILY post-AAA+ oligomerization domain-like 533 643 IPR008921 GO:0003677|GO:0006260
Apr1g0252 947 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 946 - -
Apr1g0252 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0252 Apr-Chr1 2762733 2766421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0252 287 581 Core DNA Replication Machinery Family AT1G21690 23.333 4.66e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0252 - - gmx:100819111 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0252 1 2762733 2766421 Apr1g0252 1 2762733 2766421 ECH