Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0251 ATGAGAACCACCATCATGCTCTCTTTGCTTTTCTTCCTCTTCTCTCTTCTCACTCCAACCCTCATTTCCTCCTCACCTGCTCAAAACCCTGAATCGGTCGTGCAAGAGGTAAACAGGAAAATCAATGCCTCAGCAGCTAGGCCTAGGCCTAGGAGGAGCTTGGGGTACCTCTCATGTGGAAGTGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCAAATTGGGAGCAGAATAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAGAACGCCATTGGTGGAAGGGACGGTAAGATTTACGTGGTGGACGACGCCGGCGACGACGATCCGGTGAACCCAAAACCCGGAACCCTCCGTCACGCGGTGATTCAAGATGAACCATTGTGGATCATCTTCGCCAGAGACATGGTGATCAAGCTAACGGAAGAGCTTATCATGAACTCATTCAAGACCATTGATGGTAGAGGCGCTAGTGTGCACGTTGCTGGGGGTCCATGCATTACGATACAATACGTGACCAATGTTATAATTCATGGGATTCACATACACGATTGCAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGTGATGGTGTGTCCATCTTTGGGGGAAGTCACATTTGGGTCGATCATTGTTCATTGTCCAATTGCAACGATGGTTTGATCGATGCCATACATGGGTCCACAGCTATTACCATATCCAACAATTACATGACACATCATGATAAGGTCATGTTGTTGGGTCACAGCGACTCCTACACTCAAGACAAGGACATGCAAGTCACAATTGCTTTCAACCACTTTGGGGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAGTCCAACCATCAACAGCCAAGGCAACAGATTTCTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACATGAAGATGCGCCAGAGAGTGAATGGAGGAATTGGAACTGGAGGTCAGAAGGGGACATGTTAATAAATGGTGCATTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCTATAACAACAGGTGCTGGTGCACTTAGCTGTAAAAAAGGTTCTCCTTGCTAA 1236 0.483 MRTTIMLSLLFFLFSLLTPTLISSSPAQNPESVVQEVNRKINASAARPRPRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIKLTEELIMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFLAPDDRFSKEVTKHEDAPESEWRNWNWRSEGDMLINGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGSPC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0251 411 Gene3D - 62 404 IPR012334 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Apr1g0251 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Apr1g0251 411 PANTHER PECTATE LYASE 18-RELATED 6 408 IPR045032 GO:0030570
Apr1g0251 411 Pfam Pectate lyase 148 328 IPR002022 -
Apr1g0251 411 SUPERFAMILY Pectin lyase-like 52 405 IPR011050 -
Apr1g0251 411 SMART amb_all 137 334 IPR002022 -
Apr1g0251 411 PANTHER PECTATE LYASE 6 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0251 Apr-Chr1 2736116 2738854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0251 1 411 Polysaccharide Lyase AT5G63180 78.935 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0251 K01728 - gmx:100814679 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0251 1 2736116 2738854 Apr1g0251 1 2736116 2738854 ECH
Apr10g1463 10 27052326 27054399 Apr1g0251 1 2736116 2738854 PCT