Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0247 ATGGTTGTGAAGAAAAGCCACCTCTTCTTCTTCTGTTTATTCTTCTCCCTCTTTCTCTTCATTAACGCTAAGCTCCATTTTCACCCTTCAGACCTCAAGGCTCTCTTGGCTCTACAAAACGAACTCGGAGTCAACGGTCAACTCCGAGCAACAACCACCGCAAATCCCTGTGACACCGAGGGCGTGTTCTGTGAAAGGAGACTCTCCAACAAGGAAACCTACGTGCTCCGAATCACAAGACTCGTGTTCAAATCCAAGCACCTCAATGGTGTCTTGTCCCCTACCATTGGACGCCTCACAGAGCTAAAAGAACTCTCTCTCCCCAACAACAAACTCGTTGACCGAATCCCACCCCAAATCGTTGACTGCAGAAAACTCGAAATCCTCGACCTCGGTAACAACCTCTTCTCCGGCGAAGTCCCTTCGGAACTCTCCTCGCTCACGCGCCTGCGCGTGCTCGACGTCTCCTCCAACAAACTCTCCGGCAACCTTAACTTCCTCAAACACTTCCCAAACCTCGAAACCCTCTCCATCGCCGACAACCTCTTCACAGGAAGAGTCCCAAACTCCGTTCTCTCATTCCGCAACCTCAAACACTTGAACTTCTCCGGTAACCGTTTCCTCGAAGGCTCACTCTCTCTCAACAAACGTTTCCCTCACCCACCATTAGATAACTCTCTCCCGAAACGTTACATCTTAGCCGAAACCCCTTCAACCAATGACAACATTAACAACGCTCCCGCACCTTCTCCAAAATCCTCGCACAAGAATAACACCAAAGGTTCTCATACTTCTGCATCAGCTCCTTCTCCTTCTTCTTCAACTCACCACCATCACAAGTCGAATAAGAGAAAACTGGTAGGGTGGATTCTGGGTTTTTTGGCTGGGGCAGTGGCTGGAACCATTTCAGGTTTCATATTTTCCTTGTTGTTTAAGCTAGCTTTGGCTTTGATAAAGGGCAGAGGGAAGAGTGGAGGACCTGCTATTTATAGTCCTTTGATTAGAAAAGCAGAGGATTTGGCTTTCTTGGAGAGAGAAGAGGGTTTGGGTTCGTTGGAAATCATTGGAAGAGGAGGGTCTGGAGAGGTTTACAAAGCCGAGTTACCAGGAAGCAATGGTAAATGGATTGCTATAAAGAAGATTGTTCAGCCTCCAAAAGATGCTGCTGAATTGGCAGAAGAAGATAGCAAGCTTCTGCACAAGAAAATGAGGCAAATTCGGGCTGAGATCAACACTGTGGGTCAAATTAGACACAGAAATCTTCTTCCTCTTTTAGCACACGTTTCTAGACCCGATTGCCACTACCTTGTGTATGAGTTCATGAAGAATGGGAGCTTGCAGGATACGTTGAGTAAGGTTGAAACTGGTGAGAGTGAATTGGATTGGATATCAAGGCACAAGATTGCTCTTGGTGTTGCTGCAGGACTTGAGTACCTTCACACGAGTCACAGTCCACGCATAATTCATAGGGATCTCAAGCCTGCCAATATTCTTCTTGATGATGACATGGAGGCTCGAATTGCAGATTTCGGACTCGCCAAAGCCATGCCCGATGCTAAGACTCACATCACAACTTCCAATGTCGCTGGAACTGTGGGTTATATCGCTCCAGAGTATCATCAGATTCTCAAGTTCACTGATAAGTGTGATATATATAGCTTTGGGGTTATACTTGGTGTGTTGGTTATTGGAAAGCTTCCTTCTGATGAGTTCTTTCAGCACACTGATGAGATGAGCTTGGTGAAGTGGATGAGGAAGGTCATGACTTCGGAGAATCCCAAAGAGGCTATTGATTCAAAACTTTTGGGGAATGGATATGAGGATCAAATGCTTCTGGTTTTAAAAATTGCTTGCTTTTGCACCATGGATGATCCTAAGGAGAGGCCTAATAGTAAGGATGTTAGGTGCATGCTGTCACAGATCAGCCACTGA 1932 0.4627 MVVKKSHLFFFCLFFSLFLFINAKLHFHPSDLKALLALQNELGVNGQLRATTTANPCDTEGVFCERRLSNKETYVLRITRLVFKSKHLNGVLSPTIGRLTELKELSLPNNKLVDRIPPQIVDCRKLEILDLGNNLFSGEVPSELSSLTRLRVLDVSSNKLSGNLNFLKHFPNLETLSIADNLFTGRVPNSVLSFRNLKHLNFSGNRFLEGSLSLNKRFPHPPLDNSLPKRYILAETPSTNDNINNAPAPSPKSSHKNNTKGSHTSASAPSPSSSTHHHHKSNKRKLVGWILGFLAGAVAGTISGFIFSLLFKLALALIKGRGKSGGPAIYSPLIRKAEDLAFLEREEGLGSLEIIGRGGSGEVYKAELPGSNGKWIAIKKIVQPPKDAAELAEEDSKLLHKKMRQIRAEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDTLSKVETGESELDWISRHKIALGVAAGLEYLHTSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDAKTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDEFFQHTDEMSLVKWMRKVMTSENPKEAIDSKLLGNGYEDQMLLVLKIACFCTMDDPKERPNSKDVRCMLSQISH* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0247 643 Gene3D Phosphorylase Kinase; domain 1 342 440 - -
Apr1g0247 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 643 - -
Apr1g0247 643 Gene3D Ribonuclease Inhibitor 28 241 IPR032675 -
Apr1g0247 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Apr1g0247 643 ProSitePatterns Protein kinases ATP-binding region signature. 355 380 IPR017441 GO:0005524
Apr1g0247 643 CDD STKc_IRAK 355 641 - -
Apr1g0247 643 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Apr1g0247 643 Pfam Protein kinase domain 352 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0247 643 MobiDBLite consensus disorder prediction 237 279 - -
Apr1g0247 643 MobiDBLite consensus disorder prediction 237 275 - -
Apr1g0247 643 ProSiteProfiles Protein kinase domain profile. 349 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0247 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 8 643 - -
Apr1g0247 643 SMART serkin_6 349 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0247 643 Coils Coil 389 409 - -
Apr1g0247 643 Gene3D Transferase(Phosphotransferase) domain 1 441 642 - -
Apr1g0247 643 SUPERFAMILY RNI-like 77 214 - -
Apr1g0247 643 SUPERFAMILY Protein kinase-like (PK-like) 346 638 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0247 Apr-Chr1 2693335 2695634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0247 13 643 Receptor kinase-like Gene Family AT2G31880 64.107 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Apr1g0247 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0247 - - gmx:100811980 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0247 1 2693335 2695634 Apr1g0247 1 2693335 2695634 ECH