Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0244 ATGTCTATCACTGCCACTACCTTCAAGTCCCTTACAATGGCCGAATCGTGCCTTCTCTCTTCTCACTCCTCACTCCTTTACAACAAACCCAAACCCCTCTTTTTCTCTCTTCCATCAAAACCCCTCACACTCCACTTCTCATGCCTCCACTCTTCCCCTTCACTCTCTCTCACCCTCGCCTCCCGAACCCAACGTTCTCCCGTCCTCTCGCTCGTGGCCCAAACTTCAGACTGGGCCCAACAACAAGAAGAAGAGGAAGGTGTCACTGAAACCGAAGCGGGCCTTTCCGATTGGCAGCCCAACGGCGAAGACGCTGAAATCGAAGGCAGCGTAGAAGAAGATGGTGAAGACGAAGAAGAAGGTTTCGTCGAACCGCCAGAAGATGCAAAACTCTACGTTGGAAACTTGCCTTACGATGTTGATAGCCAGAAATTAGCCATGCTTTTCGAGCAAGCCGGAACCGTTGAGATTGCCGAGGTTATTTATAATAGGGAAACGGACCAGAGTCGTGGATTTGGATTTGTAACCATGAGTACAGTTGAAGAAGCTGAGAAGGCTGCGGAGAAATTCAACCGCTATGACTATGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCTAGAGGATCTCGACCGGAACGCCCACCGCGCACTTTTGAGCCTTCCTTTGCAATTTATGTTGGTAATTTGCCATGGAATGTTGATAATTCCCAGCTGGAGCAAATTTTCAGTGACCATGGCAAGGTTTTGAATGCTCGGATAGTCTATGACAGAGACAGTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGAAGGAAATGAATGATGCTGTTGCTGCTCTTGACGGTCAGAATTTGGACGGGAGGGCGATTAAGGTGAGTGTTGCTGAAAAGCCCAGGCGTGGCTCCTTTTGA 924 0.487 MSITATTFKSLTMAESCLLSSHSSLLYNKPKPLFFSLPSKPLTLHFSCLHSSPSLSLTLASRTQRSPVLSLVAQTSDWAQQQEEEEGVTETEAGLSDWQPNGEDAEIEGSVEEDGEDEEEGFVEPPEDAKLYVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAAEKFNRYDYDGRLLTVNKASPRGSRPERPPRTFEPSFAIYVGNLPWNVDNSQLEQIFSDHGKVLNARIVYDRDSGRSRGFGFVTMSDEKEMNDAVAALDGQNLDGRAIKVSVAEKPRRGSF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0244 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Apr1g0244 307 MobiDBLite consensus disorder prediction 81 127 - -
Apr1g0244 307 CDD RRM_HP0827_like 225 301 - -
Apr1g0244 307 CDD RRM_HP0827_like 130 207 - -
Apr1g0244 307 MobiDBLite consensus disorder prediction 106 124 - -
Apr1g0244 307 PANTHER OS02G0815200 PROTEIN 2 307 - -
Apr1g0244 307 SUPERFAMILY RNA-binding domain, RBD 216 304 IPR035979 GO:0003676
Apr1g0244 307 Gene3D - 72 212 IPR012677 -
Apr1g0244 307 Gene3D - 213 305 IPR012677 -
Apr1g0244 307 PANTHER RIBONUCLEOPROTEIN 2 307 - -
Apr1g0244 307 SUPERFAMILY RNA-binding domain, RBD 125 217 IPR035979 GO:0003676
Apr1g0244 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 295 IPR000504 GO:0003723
Apr1g0244 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Apr1g0244 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Apr1g0244 307 SMART rrm1_1 224 297 IPR000504 GO:0003723
Apr1g0244 307 SMART rrm1_1 130 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0244 Apr-Chr1 2653031 2657168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0244 116 301 Eukaryotic Initiation Factors Gene Family AT3G16380 32.821 8.79e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0244 - - gmx:100810381 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0244 1 2653031 2657168 Apr9g3167 9 38451760 38455709 ECH
Apr1g0244 1 2653031 2657168 Apr1g0244 1 2653031 2657168 ECH
Apr9g3167 9 38451760 38455709 Apr1g0244 1 2653031 2657168 PCT