Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0229 ATGCCGCAGGATTCCTCCGAGCAAGACCTCGACGATCCTGACATCGAGTTCGTCGAGGTTGATCCTACCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGAAAGGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGGCGGATCTATTGCGTAAGTCTGAAGATTTGGAACGTCTCTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAATTTTACAATTCATGGGTTGACACCAAAAATGAGAACATCAACTTCATCACTGAAATTTTTACCTCGGGAACATTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTTATATCTTCACAGTCACAATCCGCCGGTTATTCATCGAGACCTTAAGTGTGACAATATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATCGGTGATCTAGGATTGGCAGCTATCCTTCAACAGGCCAATTCAGCTCATAGTGTCATAGGTACCCCAGAGTTCATGGCCCCTGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTTGAGCTGGTAACCGTTGAGTACCCGTATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAAATCTTGACGTTAGAGCATTTATAGAAAAGTGTATCGCTCATGTATCTGAACGTTTGTCTGCAAAGGATCTCTTGATGGATCCCTTTCTTCAGTCAGATCATGATAGAAATAGTTATCATAATCAAGCAATTGGACAAAATGCTGAGGATAATTCTGCTGAGACATGTAGGGAATTCACAGTGGAAGGTCAGAGGAGAGATATTAATACAATATTTTTAAAACTGCGAATCGCAGATTCCACAGGTCACATTCGCAATATCCACTTTCCTTTTGATATTGGAGCAGACACTGCAATCTCTGTTGCTAGTGAAATGGTTGAAGAGTTGGAACTCACTGATCAAGATGTTACAGCTATTGCTAAGATGATTGACTCAGAAATTCAATATCACATTCCTAGTTGGAATCCAAATGAAACTCCTGTTGACAGTTTTGGTCAAGATTCAGGCTGTACTTCTGAAACTAGGCCCGAGGCCCCTCCTGTACCAAATGATTCAATTACTTCTAGTGGCAATCTTGCATTGGAAGTATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCAAAGGGAGTTGGTGGAAACTCTCCATCTAGGCCTGGCCCTTCAAATTTGTCTTTTGAAGTGGATGCGAATGCTGAGGAAGGAAACTTGACAGAAAATGGTGCTATTTCAGCTGAGCTGGATCCTCATGATCAGATCTGTGCTGGTGATTGTAGTGATGAAAAGGAATGTGATGGGACTGTTGATTCCCCTTGCAGTGAGAAAAGTATTACGTCGGAATATTTAGGAGCAACTCATGAAAAATCTTCTCGGGAAGAAATATCTGGAAGTTTGAAAGATTCTGAAATCAAATGCATCAGTCAAATAGCATCAAAACTGGAGGGTTTGTTGGTTAAACAACGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCGGATATTTTGAAGGAACTTCCCCCAGAAATGTGCCAGAAGGTCCTAAGTATATGCAACCTTCTGATGCCTGAAGGTGAAATGTAG 1797 0.414 MPQDSSEQDLDDPDIEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRKSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTNLDVRAFIEKCIAHVSERLSAKDLLMDPFLQSDHDRNSYHNQAIGQNAEDNSAETCREFTVEGQRRDINTIFLKLRIADSTGHIRNIHFPFDIGADTAISVASEMVEELELTDQDVTAIAKMIDSEIQYHIPSWNPNETPVDSFGQDSGCTSETRPEAPPVPNDSITSSGNLALEVLPSGRKYWSDSPKGVGGNSPSRPGPSNLSFEVDANAEEGNLTENGAISAELDPHDQICAGDCSDEKECDGTVDSPCSEKSITSEYLGATHEKSSREEISGSLKDSEIKCISQIASKLEGLLVKQREELDELKRKHKLAVSDILKELPPEMCQKVLSICNLLMPEGEM* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0229 598 MobiDBLite consensus disorder prediction 445 459 - -
Apr1g0229 598 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Apr1g0229 598 MobiDBLite consensus disorder prediction 388 424 - -
Apr1g0229 598 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Apr1g0229 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 593 - -
Apr1g0229 598 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Apr1g0229 598 Gene3D - 324 412 - -
Apr1g0229 598 CDD STKc_WNK 25 285 - -
Apr1g0229 598 MobiDBLite consensus disorder prediction 388 408 - -
Apr1g0229 598 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0229 598 Coils Coil 545 572 - -
Apr1g0229 598 MobiDBLite consensus disorder prediction 438 461 - -
Apr1g0229 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Apr1g0229 598 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0229 598 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0229 598 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 6 593 - -
Apr1g0229 598 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 328 382 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0229 Apr-Chr1 2496525 2500762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0229 506 586 MAP Kinase Kinase Kinase AT3G48260 38.824 4.25e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Apr1g0229 Pkinase 4.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0229 K08867 - gmx:100301899 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0229 1 2496525 2500762 Apr1g0229 1 2496525 2500762 ECH