Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0225 ATGCTGCAAACGGTTCCGCCCAGAGAAGCCATCCACGGCGGCTTCGGTGGACGGACGGTGGTGGTCGGAATTAAGATGGACTCTCCCAGCAAAGAATTGCTCACGTGGGCTTTGGTCAAAGTTGCTCACCCTGGTGATACCGTCGTTGCTCTGCATGTGCTTGGGAACAATGATATTGTTAATGGAGATGGAAAATCGTCTCTGCTTTCGCTTGTCAAGGCATTTGACTCTGTTCTTGCTGTCTATGAAGGATTCTGCAATTTGAAGCAGGTTGACCTCAAGCTCAAAATTTGCCGCGGTTCATCAGCGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTATTCTGCAACTCATATTGTCGTTGGAACTGCTCAAGCCCTCCACAAAATCCGGTCATCTACCTTTGTAGCTAAGTACTGTGCTAAAAAGTTGTCCAAGGATTGTTGTGTTCTTGCTGTTAACAATGGAAAAGTTGTGTTCAAGCGTGACAACTCGCCACCAAATGTTGCTGACTTACAAGGGATTGATCATCATCACAGAAATGGTTTGCTTGCTTCAATTCATTGGACACTCAGTAAGAGTACTAAAGTACTAAGTGAGGATAATCCAGGGATGGATGCTTCTGAGAAAACTCGCCAAATTTCGGATCACAGTTTAGCTAAGTTTTTTCTGGATTCTACAGACACTGTTAGAAAACAGAACTGCTCAATTTGTGGCACAACCATGGCATTGCCAGACACTTCTTGCCACCAATCTGCAGAAGGGTCTAATGGTGATGAGAGTAGAGAGAATTCTTTGGCTATAGTGCCTGTGCAAACCACTGTTGCAGCACAACCGGAATTGAAACCAGGTTGGCCACTACTACACCGGAGAATTTTATCAGATAGGCAATCTGCTGATAGATCATTGGTGCGCCAACAGATCTCTGTGGTCCAGTGGGCAATGAGGTTGCCCTGCAGAAATATTTCATATGTTGCAGATCATGATAAAAAATCTAACATTTGTGATCAAGGTCAAGATCAACCTGCGGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCCGTAGATGCTGAAATAGGGACTGCTTCTTCGCCTGAACGCAATTCAAGAAGCATTCCTAAAGAATTGGAGGGCCTTCATGATAAATACTCGTCAACTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGCTGCCTTCCCGATGGGAAGGAGCTTGCCGTCAAGATCCTAAAACCTTCTGATCATTTATTGAAGGAGTTTCTCTTGGAAATAGAAATTATCACTACCTTGAATCACAAAAACATTATTTCCCTCCTGGGATTCTGCTTTGAGAACGGAAATCTTCTTCTGGTCTATGATTTCTTATCAAGAGGAAGCCTCGAAGAGAACCTTCATGGGAAAAAGAAAAATCCACTTGTGTTTGGTTGGAATGAAAGATATAAGGTAGCAAAGGGTGTTGCTGAGGCTTTGGATTATTTGCATTCTAAAGATGATCAGCCTGTGATTCATCGAGATGTAAAATCATCAAATGTGTTATTAGCTGAGGATTTTGAACCCCAGCTCTCTGATTTTGGATTGGCAAAATGGGCATCAACCTCGTCATCACATATAACCTGTACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGATAAAATTGACGTCTATGCATTTGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAATGGTGATTGTCCAAAGGGTCAAGAGAGTCTCATTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAAGTGTTACAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTCTTGGCAGCCAGTCTTTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTTCAAGGTGATGCCGATGCAATCAAGTGGGCAAGGTTAGAGGTTAATGCTTTGGAAGCACAAGAAATGCTTGATGACGAAGCGTGTCCACCTAGTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCCATGTGCAGTGTTGAACAAGGCATCTCATTGGAGGACTACTTGAGAAGCAGGTGGAGCCGCACATCGAGCTTTGACTGA 2247 0.4317 MLQTVPPREAIHGGFGGRTVVVGIKMDSPSKELLTWALVKVAHPGDTVVALHVLGNNDIVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSAKKILVREANGYSATHIVVGTAQALHKIRSSTFVAKYCAKKLSKDCCVLAVNNGKVVFKRDNSPPNVADLQGIDHHHRNGLLASIHWTLSKSTKVLSEDNPGMDASEKTRQISDHSLAKFFLDSTDTVRKQNCSICGTTMALPDTSCHQSAEGSNGDESRENSLAIVPVQTTVAAQPELKPGWPLLHRRILSDRQSADRSLVRQQISVVQWAMRLPCRNISYVADHDKKSNICDQGQDQPAALDSESGALVPVDAEIGTASSPERNSRSIPKELEGLHDKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDHLLKEFLLEIEIITTLNHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLHGKKKNPLVFGWNERYKVAKGVAEALDYLHSKDDQPVIHRDVKSSNVLLAEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPINGDCPKGQESLIMWASPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAASLCIRRAPRARPQMSLISKLLQGDADAIKWARLEVNALEAQEMLDDEACPPSNLQSHLNLALLDVEDDSLSMCSVEQGISLEDYLRSRWSRTSSFD* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0225 748 Gene3D HUPs 17 155 IPR014729 -
Apr1g0225 748 SMART serkin_6 402 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0225 748 SUPERFAMILY Protein kinase-like (PK-like) 383 675 IPR011009 -
Apr1g0225 748 CDD STKc_IRAK 408 675 - -
Apr1g0225 748 PANTHER - 13 731 - -
Apr1g0225 748 CDD USP_Like 19 153 - -
Apr1g0225 748 PANTHER OS08G0249100 PROTEIN 13 731 - -
Apr1g0225 748 ProSiteProfiles Protein kinase domain profile. 402 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0225 748 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 124 - -
Apr1g0225 748 Pfam Universal stress protein family 18 150 IPR006016 -
Apr1g0225 748 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Apr1g0225 748 Pfam Protein kinase domain 406 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0225 748 Gene3D Phosphorylase Kinase; domain 1 366 476 - -
Apr1g0225 748 Gene3D Transferase(Phosphotransferase) domain 1 477 689 - -
Apr1g0225 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0225 Apr-Chr1 2466331 2471482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0225 389 669 Trihelix Transcription Factor Family AT1G68690 45.455 2.32e-75 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr1g0225 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0225 - - aprc:113846853 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0225 1 2466331 2471482 Apr1g0225 1 2466331 2471482 ECH