Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0223 ATGGGATCGTGTGGGGAATCTGTTATCGTTGATGATCGCTCAGGAGAGTCTGTTATCGAACAGCATTTGTGCTCAGAGATTCCGAAGCAGTTAGTTTCCGTGCAGGCGTCCTGTTCTGAAGAAGCTTACAATGGGTTGGACACTAATATTGACCCCTCCAGTATGATTGATGGTTATGAGGGTGAGGGTCATGCGGGTTCTGCAAGCATTGTTGATGTTACTGGCGGGTCCGGAGATGCTTTGGATTTGGCAAGTGAGTGTAAGAATGTTGATATGTTACCATTGGAGAAAACTGCAGAAGATAATTGTCAGAATTGTTTGGGGATTTCTTGTGGGAACAGTGAAATTTCCGGTCCAAAAAGTGGTTCAGAGTCAAATTTTCAAGACGATGGCAACTTTGACCTGCCATTGGAATCCTTAACTACAAATGAGTTGCAGAGTCATTGTGCCCAACAGGATGAGCAGAATGATGGTAAGAGCGATGTATTACCCTCAGAAGGAGATGATTTAGATCTCACGGAAGGGAAAAACAGCGAGGCTGATTTTCTCGCTGATGCTTTCAATTGTGCACTTGATTTCAGGCATTCTGGAATGTCTTTGGAATCAGAATCCGAGGTTGACTTGCTAGTTGATTGCAGCCTGAAAAATGAGCAGGAGGAAATTATGAGAAATGCAGATCCTTTGTTGAAGGTTGTAGAAAAATGTGAGGCTTTAATTCAGAAGGAAGCTGATGCTTCCAGGCACATATCACCTTCTCCAGTTACAGAAGTGCCATCAGCTGCATTATGTACAGATACAGAAATAGAGAGCACAAGTGATCAGCTACATTGTCTGAAAGATGGTGAGGATTGGAATCATACTTGTGAAGAAATCAATATTAGTTCTTGTGTAAATTTATCATCCTCTCCAGGTTGCCATGTGACCTTGGGGAGGTCACCTGTAGTTGATTCTCCTTGTGAGCCTGTCATGTTGGATCCAGGGTGTGAAATGAAGAATGGTGTAATGCCAATAGAAGATAATTTCTGTAAATTGAAGGATTGTACCTCAGAGGAAACAGCCAACTCTACCTTTAAAAAATCATTATATCCAGAATCAGGTCAGCCCTCTGATGTACCTGATTTCTGTTGTTTGGGCAATGATGTCTCCGTCAATAATAATAGTGCAGTGGATAATCCTGGACAGACAGGTAATGATGGAAAAGAAGCTGTTGAAATTGGTTGTGTTACTGAAAGCATTCCATTACCTTCTCAAAGAAATAGTCAGAGAACTAAATTTGGTTGTAAGACACAAACCAAAAAGGCTACAAAAAGATGCAAGAACAAGGCCAAGGTGACTCGTCTTGGTGGGGGTATGGAGATAAACTTAGAGGCTGCCAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTACGTGGGGATTGATTGGGAATATTAAACACTTTTTTGAAAAAGATAATGAGCTTGGAGTTGGGGAAGCCATGTGCCAAGAATTGGGAAAAGCTAGACGTAGGCGTCAAAGTGGGAAAGCAGCTAGGAATGATGCAGGTACTAGCTCATTGAGTTCAGTACAGAAATGTTCTGTTTCAACTACTCGCGTTCGTCTGAAGATCAAGTTTGGGAAAGAAATTGATTTAAGTTGCTCAAATGTCTTGATTCCAGCAGCTGCTGATGGCTTGACTTCTGCTTCCTTCTTGGGGTCTGGCTTAGGTTCTCAGGAAGTAGCCAGCAATGTTGAAGAAAAATTTTCAGAAGCAGCGGCTATGGGAAATTTAGAATCTTTCAATGACAACCTGGATAAGGATGGTCCTGTTCTCAAAGGAGACATTGTAAATAGCCAGTTAGAAAATACTGAAATAACAGGGAAATCAGATGGGGATGCAGAGGAACTGTGTCTTGCTGTTCCTTCAGAGAAGGTGGTTGAAGCATTGATTGAACCTATCAATAATAAGGGTATGGATCCTGGGACTTCACCTGATTCCGAAGTTATTAATTCAGTTCCTGAAGTCCAGGTTGGAGAAAGACATCAAGAAGATGTACATCATGCTATCTTAGGCTCTTCGAAAGATTTAAATTCTAATTTGGATGTTACCTTCAGTAAGAGAGGGAAGAAAAAAGACAAACTTATTTGTTCCAATAATTGTATCACTGAAGATGGATCACAATGTCCACCTGGGAATAGCAGAGCTAAGCATTCAAAGAATCGCGGACGTAAGAAGAATTCCAGTGATGCATTTAGCTCTTTGGAATTGGCTACTTCTACAGAGATAAGCATACCTGTGAGCAGTAAAGAATTGTCCATTGAATCATTGCCCCTTCCTGTAGAGACTGAACTTGAAGGCCTCACGGAGGCTTTGAATGTTAAAAATCACATGGAAGTTAAGACAACTTGCAAACCATCTGTCGACCATGGATTATCAGAATCCCAGGGTTCTGAGAATTTGCCATCTTCTGCAAGATCCTTTGGGCGTAAACTGCCAAAAAGTCTTAGACCTAGTAAAGTTAGCAAGACCAAGTCAAAAGCTTCTGACTCAACAAGAAGAAAGAAAACTGCTTCTACGCGAAAGGAGAAACAGAAGAAGGCAATTAATAAGAGTGAAGTCAAGGGAAAAGGTGTCGCTCTTAAAGTTGCATGTGAAGCAGAAGATCACCCACATCCAGCAGCAAATGGCATTGGAAATCATAAGTTGGAAGCTGTTGGAAATATTAATGCTGGGGACAACAAAATATCAGTTAATGTATCTAATTTTGACATGCTGTCTGGTGTTGGTCTGGGGGAGCAGCTTCTATCACCCCGTAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGAGGCGAATTCCTGCTGTGCTTGCAGACCTAATTGATGAAACTAACTGCACCTGGACATGTAAGGACAGCAGTGATGAAGCCTTTGCTGATTGTGCTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCTGGTGAAGAAGATGCATATGAAGACTCCAAAAATTATAAGGAATTAGAATATCGGCCACCAATGGTTTCCCAGGAGTCAACTTTTACCCGAATTTTGACCAATGAGTTTCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAACCACCTCAAGAAGGCAAGTTGGGCTGTGGGGATGAATGTCTTAATCGGATGCTTAACATCGAATGCGTGCAAGGAACCTGCCCATGTGGGGATCATTGTTCCAATCAGCAGTTCCAAAAACGCATTTATGCCAGCCTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTTAAGGCACTTGAGCATGTAGCTAAAGGCCAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGATATGCAAGCTTACGAGGCACGACAAAGAGAGTATGCTTTGAAAGGTCATAGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATTGATGCAAGTGCTAAAGGAAACTTGGGCCGTTTCATTAATCATAGTTGTGATCCTAATTGCCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGCGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTTATAGTTCAAAGTGATTCAGATGAAGAATTTCCAGAACCTGTTATGCTTTCCGAAGATGGTGAAATTGAGGATGCTGTACCTATACCCATGTACTTTGATAATGTTGATACACAATCTTCCAGGCATATGTTAAAAGACAGGGATATTTTGGACAAGTCTACCACTGCTCTCAGTGGAGACGGTTCTCCAGAGAAAGAGAGTTCCATGAACCCTGCCTCTGCTGTTTCTCTGTTGCATAGCTCCGTAGAAGCAGAGGACTCGAAGGGCAAGTTACCATCTTCTGTTCATGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACCAGCAAACCCAAGCCTACCTTAGAAGAAGAATATGCAATAGAATCAGAGTTTGCTGACAAAACTTTGATTCAAAGATTAGAGACTACTTCCCTTACAATTGTTGACAAAGTGTTAAGTAATAGGGAATCCAAGTCTGAAATAGTTGAAGGCAGGAAGGATTTTTCACAAACACATCTGCTTGTGAAGACTCCTAAGTTAAATGGTTCTGTTAAAAAGGGAAAGGTTCGTGCTGATCCTCCAAATGGCCTTAAAGCTGAGGTGACAGCCAACCGATTGCAGGTGTCATCTATCAAGCACAAAAAAGTAGAAGGTTCTTCCAATGGAAGGTTTGAAGCAGTTCAGGAGAAACTAAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGGTACTTAAAGCTTTTGTTTCTCACTGTGGCATCAGGTGATAGAAGCAATGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCCCTTCTGAAAACAAAATCTAGGGCAGTGCTGAATGATATAATTAGCAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCCATACTACGAAAGCTTCTTAAGGTCTTAGAGTTCCTAGCTGCAGGCAGGATATTGACATCCGAACATATCTATGGTGGTCCTCCATGTCATGGAATGGAGAGCTTTAGGGAGTCAATGCTTTCCCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCAGAGACAGATGGTTTCCCCGACATGCCAGAAAACATGGCTATATGGACAGGGATGATAATTGGGTGGAATCTCACAGAAGTTTCAACTGTAACAGATTTCCTGTATCACAGTCTCTTAGGCATGAGCAGGATATAAGGGCTACAGAAGCAATTGATTGTACTCAGCAGTCAATGCTTGTGACAACTTCAGTAGATGCTGGTGCCCAGGAAGCCTGTCCTGCAGTGTCTCTAGATGGTGTTGAAATCAAAGGGGCAAAAAAACGTAAGCGTAAAAGCCGATGGGATCAACCAGCAGAGGGAAATTCACATTCTGATATGGTCATTAGCTCTATTGGTGAAAGCCAGAACATTCAAGAGGATGTCCCACCAGGGTTTTCATGTCCAATGGGTTCATTAAATGCTTCCCTAAACTCTGGTAATTTTGGCTTGCAAAATGCAAGCCATTCTGGAGGTCCCTCTGATTTAGTTATTGGTCATCCAAAAGAGAAGTTTAACTCTCGTTTGCCTGTCTCGTATGGAATGCCATGGTCTGTTGCCCAGCAGTATGGAACACCTCAGGCTGAATTTGCAGAGTGTTGGGTCACTGCTCCTGGCATGCCTTTCCACCCATTTCCTCCACTACCCCCCTATCCACGGGACAGCAAAGACTGTCAACCTTCTAATACTACTATCAATGCTGTAACAGTCGATCAACCTGCTGAAGTTAGGCTTTGTGATACAAGTGGTATGGTTAATTGTTACTCAGATGATATGATTCCCAGCACAACTGGTTCTAACCCTGAAGACCTTCAGTGCGGGGACAATAAACACATTACTAAGAGATTGAAGGATGACTCCAATGATTTGGGAAGGAGGTACTTTAGACAGCAGAAATGGAATAATTTAAAAATACATCGACCATGGTTCAGGAGGAATGCATGGAGTTGTAACGAGAACAACTCTAGCGGTGATTTGTGCAGTATAGATGTAGATGTACCAAAAGACTCAAAAGTTACTTGTAATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 5904 0.4182 MGSCGESVIVDDRSGESVIEQHLCSEIPKQLVSVQASCSEEAYNGLDTNIDPSSMIDGYEGEGHAGSASIVDVTGGSGDALDLASECKNVDMLPLEKTAEDNCQNCLGISCGNSEISGPKSGSESNFQDDGNFDLPLESLTTNELQSHCAQQDEQNDGKSDVLPSEGDDLDLTEGKNSEADFLADAFNCALDFRHSGMSLESESEVDLLVDCSLKNEQEEIMRNADPLLKVVEKCEALIQKEADASRHISPSPVTEVPSAALCTDTEIESTSDQLHCLKDGEDWNHTCEEINISSCVNLSSSPGCHVTLGRSPVVDSPCEPVMLDPGCEMKNGVMPIEDNFCKLKDCTSEETANSTFKKSLYPESGQPSDVPDFCCLGNDVSVNNNSAVDNPGQTGNDGKEAVEIGCVTESIPLPSQRNSQRTKFGCKTQTKKATKRCKNKAKVTRLGGGMEINLEAARKKRSCFSKPARSSTWGLIGNIKHFFEKDNELGVGEAMCQELGKARRRRQSGKAARNDAGTSSLSSVQKCSVSTTRVRLKIKFGKEIDLSCSNVLIPAAADGLTSASFLGSGLGSQEVASNVEEKFSEAAAMGNLESFNDNLDKDGPVLKGDIVNSQLENTEITGKSDGDAEELCLAVPSEKVVEALIEPINNKGMDPGTSPDSEVINSVPEVQVGERHQEDVHHAILGSSKDLNSNLDVTFSKRGKKKDKLICSNNCITEDGSQCPPGNSRAKHSKNRGRKKNSSDAFSSLELATSTEISIPVSSKELSIESLPLPVETELEGLTEALNVKNHMEVKTTCKPSVDHGLSESQGSENLPSSARSFGRKLPKSLRPSKVSKTKSKASDSTRRKKTASTRKEKQKKAINKSEVKGKGVALKVACEAEDHPHPAANGIGNHKLEAVGNINAGDNKISVNVSNFDMLSGVGLGEQLLSPRNAWVRCDDCHKWRRIPAVLADLIDETNCTWTCKDSSDEAFADCAIPQEKSNAEINAELGLSDASGEEDAYEDSKNYKELEYRPPMVSQESTFTRILTNEFLHRSHKTQTIDEIMVCHCKPPQEGKLGCGDECLNRMLNIECVQGTCPCGDHCSNQQFQKRIYASLKWFKCGKKGYGLKALEHVAKGQFLIEYVGEVLDMQAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVQSDSDEEFPEPVMLSEDGEIEDAVPIPMYFDNVDTQSSRHMLKDRDILDKSTTALSGDGSPEKESSMNPASAVSLLHSSVEAEDSKGKLPSSVHVEEISQQMEDVTSKPKPTLEEEYAIESEFADKTLIQRLETTSLTIVDKVLSNRESKSEIVEGRKDFSQTHLLVKTPKLNGSVKKGKVRADPPNGLKAEVTANRLQVSSIKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEFLAAGRILTSEHIYGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWFPRHARKHGYMDRDDNWVESHRSFNCNRFPVSQSLRHEQDIRATEAIDCTQQSMLVTTSVDAGAQEACPAVSLDGVEIKGAKKRKRKSRWDQPAEGNSHSDMVISSIGESQNIQEDVPPGFSCPMGSLNASLNSGNFGLQNASHSGGPSDLVIGHPKEKFNSRLPVSYGMPWSVAQQYGTPQAEFAECWVTAPGMPFHPFPPLPPYPRDSKDCQPSNTTINAVTVDQPAEVRLCDTSGMVNCYSDDMIPSTTGSNPEDLQCGDNKHITKRLKDDSNDLGRRYFRQQKWNNLKIHRPWFRRNAWSCNENNSSGDLCSIDVDVPKDSKVTCNAEDAICREEKGGNNIY* 1968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0223 1967 MobiDBLite consensus disorder prediction 117 136 - -
Apr1g0223 1967 Pfam AWS domain 1060 1094 IPR006560 GO:0005634|GO:0018024
Apr1g0223 1967 SMART set_7 1097 1220 IPR001214 GO:0005515
Apr1g0223 1967 MobiDBLite consensus disorder prediction 838 868 - -
Apr1g0223 1967 Gene3D SET domain 991 1246 IPR046341 -
Apr1g0223 1967 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 427 1891 - -
Apr1g0223 1967 Pfam CW-type Zinc Finger 937 983 IPR011124 GO:0008270
Apr1g0223 1967 CDD SET_SETD2 1096 1238 IPR044437 GO:0010452|GO:0046975
Apr1g0223 1967 SUPERFAMILY SET domain 1027 1235 IPR046341 -
Apr1g0223 1967 ProSiteProfiles SET domain profile. 1097 1214 IPR001214 GO:0005515
Apr1g0223 1967 SMART PostSET_3 1222 1238 IPR003616 -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 159 174 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 721 748 - -
Apr1g0223 1967 ProSiteProfiles Zinc finger CW-type profile. 931 985 IPR011124 GO:0008270
Apr1g0223 1967 ProSiteProfiles Post-SET domain profile. 1222 1238 IPR003616 -
Apr1g0223 1967 Pfam SET domain 1108 1214 IPR001214 GO:0005515
Apr1g0223 1967 MobiDBLite consensus disorder prediction 800 868 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 149 174 - -
Apr1g0223 1967 PANTHER SET DOMAIN PROTEINS 427 1891 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 1302 1321 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 1702 1722 - -
Apr1g0223 1967 Gene3D - 928 990 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 1290 1321 - -
Apr1g0223 1967 MobiDBLite consensus disorder prediction 803 820 - -
Apr1g0223 1967 ProSiteProfiles AWS domain profile. 1045 1095 IPR006560 GO:0005634|GO:0018024
Apr1g0223 1967 SMART shorttest3 1045 1096 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0223 Apr-Chr1 2434543 2447579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0223 1080 1237 C2H2 Transcription Factor Family AT2G23740 34.254 4.71e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr1g0223 SET 9.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0223 - - gmx:100795379 2918.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0223 1 2434543 2447579 Apr1g0223 1 2434543 2447579 ECH