LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0212	ATGATGAGTTTCTTGAGGCCTTCTGCATTGTACCACTTTCTGATGACTTACCCTTCACTGAAATGGATGCCGTGTCAGAGTTGGGGGTTCCTTCGATGGCCGGGTCTCGATGGCTTCATGAGGCTTTTGGTGGTTGTGCTTCTTTGGTCTCTGTTCTCGGAGCTTCGCTACATACCTTCATCTTCCATGTACCCCACCCTTCGTGTTGGCGATCGAATTCTTGTGGAAAAGGCTTCATATTACATCAGGAGTCCTGCTATACATGATATTGTAACATTTCGGGATCCAAAACAGCTTTCTGGAGGAAACAAAGATGCTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACACTGTTGAGGTTCAGCATGGGGCACTCTACATCAACGGTGTTGCACAGGAGGAAGATTTCATAGCAGGGCCACCAACATACACAATGCCATTAACTCATGTACCTAAAGGCCATGTTTATGTGTTGGGAGATAATCGTAACAATAGTAATGATTCCCATGTGTGGGGGCCACTTCCTGTAAAGAACATAGTTGGAAGATACGTCATGTGCTATCACAGACCCACAAACATTTGA	588	0.4473	MMSFLRPSALYHFLMTYPSLKWMPCQSWGFLRWPGLDGFMRLLVVVLLWSLFSELRYIPSSSMYPTLRVGDRILVEKASYYIRSPAIHDIVTFRDPKQLSGGNKDAVFIKRIVAKAGDTVEVQHGALYINGVAQEEDFIAGPPTYTMPLTHVPKGHVYVLGDNRNNSNDSHVWGPLPVKNIVGRYVMCYHRPTNI*	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0212	195	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	51	67	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Apr1g0212	195	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	108	120	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Apr1g0212	195	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	152	171	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Apr1g0212	195	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	2	194	-	-
	Apr1g0212	195	SUPERFAMILY	LexA/Signal peptidase	52	189	IPR036286	-
	Apr1g0212	195	Pfam	Signal peptidase, peptidase S26	39	189	IPR019533	GO:0004252\|GO:0006465
	Apr1g0212	195	TIGRFAM	sigpep_I_bact: signal peptidase I	40	189	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Apr1g0212	195	Gene3D	Umud Fragment, subunit A	60	192	-	-
	Apr1g0212	195	ProSitePatterns	Signal peptidases I serine active site.	60	67	IPR019756	GO:0004252\|GO:0016021
	Apr1g0212	195	CDD	S26_SPase_I	54	184	IPR019533	GO:0004252\|GO:0006465
	Apr1g0212	195	ProSitePatterns	Signal peptidases I signature 3.	157	170	IPR019758	GO:0004252\|GO:0016021
	Apr1g0212	195	PANTHER	SIGNAL PEPTIDASE I	2	194	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0212	Apr-Chr1	2313868	2320014	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0212	63	184	MADS-box Gene Family	AT1G29960	32.520	5.09e-09	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0212	K03100		-	gmx:100306121	353.214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr1g0212	1	2313868	2320014	Apr1g0212	1	2313868	2320014	ECH