Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0210 ATGTCGAACCAGAATCGTCGTTCATCGTTTTCGTCTTCAACCACATCATCTCTAGCGAAGCGCCATGCAACTGTTTCCTCTTCAGAAAACAACGTGGCCAAGGTTATGGCCAAGAAGCGACCTCCCCTCACTAACCTCACCAACACCATTGCTTCTCGCAACTCATCATCCTCTTCCTCTTTGGTGCCATGCGGAACTAAGGTTGCTAAGACCAAGAAAGAAGTTCCACCATGCTTCACTAGTTCAGCAGTTTCAGGGAATAAAAGACCCTCTTTGCCTAGTGTTAAATCTACCAGTGCTGTTGTTTTTCCTAAGGCTACTTCAATCTTAGAAAAGAATGGAGCTGCTGCTCCTTCAGTTGCAACCCTCACTGTTCATGTTTCGAGCACCATGGATGTTTCACCTAGTAAATCAGATGGCATGTCAGTTTCAATGGACGAGTCAATGTCTTCTTGTGATTCTTTCAAGAGTCCTGACATTGAGTATGTCGACAATAGTGATGTTGCAGCAGTTGATTCAATTGAGAGGAAGACATTCTGCAATTTAAACATCTCTGATACTACAGACCCAGCAGGTAACATCTGTAGTAGAGACATACTTGTTGAGTTGGAAAAGGGGGACAAAATTGTCAGTGTCGATAATAATTACACGGATCCACAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTGCGTGCATCTGAGGCGAAGAAAAGGCCTTCCACAGACTTCATGGAAAGCGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTTTCAGGGAACGTGATGAATAGGCAAAAGTTACAACTACTTGGTGTTGCCTCCATGATGATTGCCTCCAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTCTCTTGAATTTTTTGAAGTTCGAAATGACAGCCCCAACAATTAAGTGTTTCCTAAGAAGATTTGTTCGTGCAGCTCAAGGAGTTGACGAGGTCCCTTCCCTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTGTCTCTATTGGAGTACAACATGCTTTGTCATGCTCCATCACTTGTAGCCGCTTCTGCAATTTTCCTGGCAAAATTCATTCTTTTCCCTTCGAAGAAACCATGGAATTCGACATTGCAGCATTACACACTCTACCAACCTTCTGATCTGTGTGTTTGTGTAAAGGATCTGCATCGGCTTTGTTGCAACAGTCCTAACTCTAATTTGCCTGCAGTTAGGGAAAAATACAGTCAGCATAAGTACAAATATGTGGCCAGGAAGTACTGCCCTCCTTCAATACCTCCAGAATTTTTCCAGAATTGA 1473 0.4284 MSNQNRRSSFSSSTTSSLAKRHATVSSSENNVAKVMAKKRPPLTNLTNTIASRNSSSSSSLVPCGTKVAKTKKEVPPCFTSSAVSGNKRPSLPSVKSTSAVVFPKATSILEKNGAAAPSVATLTVHVSSTMDVSPSKSDGMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFCNLNISDTTDPAGNICSRDILVELEKGDKIVSVDNNYTDPQLCASFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQKLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESALLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYNMLCHAPSLVAASAIFLAKFILFPSKKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAVREKYSQHKYKYVARKYCPPSIPPEFFQN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0210 490 SMART Cyclin_C_2 357 480 IPR004367 -
Apr1g0210 490 SMART cyclin_7 264 348 IPR013763 -
Apr1g0210 490 SMART cyclin_7 361 449 IPR013763 -
Apr1g0210 490 CDD CYCLIN 355 448 IPR013763 -
Apr1g0210 490 Pfam Cyclin, C-terminal domain 357 475 IPR004367 -
Apr1g0210 490 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g0210 490 ProSitePatterns Cyclins signature. 259 290 IPR006671 -
Apr1g0210 490 PANTHER CYCLIN-A1-1 28 489 - -
Apr1g0210 490 SUPERFAMILY Cyclin-like 357 482 IPR036915 -
Apr1g0210 490 Gene3D - 242 355 - -
Apr1g0210 490 PANTHER CYCLINS 28 489 IPR039361 -
Apr1g0210 490 CDD CYCLIN 258 347 IPR013763 -
Apr1g0210 490 MobiDBLite consensus disorder prediction 42 63 - -
Apr1g0210 490 SUPERFAMILY Cyclin-like 217 354 IPR036915 -
Apr1g0210 490 MobiDBLite consensus disorder prediction 1 63 - -
Apr1g0210 490 PIRSF Cyclin_A_B_D_E 1 486 IPR039361 -
Apr1g0210 490 Pfam Cyclin, N-terminal domain 228 354 IPR006671 -
Apr1g0210 490 Gene3D - 228 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0210 Apr-Chr1 2307351 2310551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0210 1 490 Core Cell Cycle Gene Families AT1G44110 63.380 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0210 K06627 - gmx:100789565 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0210 1 2307351 2310551 Apr1g0210 1 2307351 2310551 ECH
Apr9g0803 9 15448095 15451728 Apr1g0210 1 2307351 2310551 PCT