Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0209 ATGTTTACCCGAAACCGGCGTTTGCCGTCGTCTTCTGAGAATAAGTCCTCCGTTTCAGAAACTTCAGGCAAGGTCACTGCCGTGAAGAACCCCTCGACGAAGAAGCGTTCCGCTCTCACCGACGTAACTAATAACCGAAATGTCTCTCTCTCCAAACCTATGGTTCCATGCGTGTCCAGAGCTGCCAAGACGAAGAAGGATTTTATTGCCGGTTCGCAGAAAATGGTTATATCCGGGGACACTTTGCAACCGTCATTGAGTGAAAAATCAAGTGGGTTGGTACTTTCTAAAGAAGGACGTTCGAACAGCAGTAGTCGACCCAAGGATGGGGTTGAAATCTTCCTTGCTCCAAGCACTGATGGTGCTGTTTGTCCTGATTTTAATGGCGTGATCCGTCCTCCGAAATTGATGGACATTTCTCCAAGTAAATCCTTTAGTGGTTCAGTTTCACTAAGTGAGAGCATGTCAACCAGTGATTCTATGAAGAGTCCGGAATTTGAATATATTAACAGCGATAACGTCGTATCCACCAAATCAATTGAGAATAGGACAATTGACATTCTCAATATTTCAGACTCTTCAAAAATAGCAGGGAGAATTTGCGGGTGTGATCCCACTGAGAAGATAGAAGAAGCAAATGAAGTTGTGGATATTGACTACAACATCAAGGACCCACAATTCTGTGCATCCATTGTCCGGGAAATCTTTGAATATTTGCGTGTATCTGAGGAAATCAAAAGGCCGTCTATGGACTTCATGGAGAACATACAGAAAGACCTCAATGCTAGCATGCGGGCAATACTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGTCTTCTACCTGATACGCTATTTTTGACAGTTAACTACATTGATCGCTATCTTTCTGGCAATGCAATGAATAGGCAGCGATTGCAATTACTTGGTGTTGCCTGTATGATGATTGCTGCAAAATACGAGGAGATCTGTGCCCCTAAGGTGGAAGACTTCTGTTATGTAACTGATAATACATATTCTAAGGAGCAGGTGTTGCAGATGGAATCTGCTGTGCTGAAGTTCTTGAAGTTTGAAATGACAGCTCCCACTGTTAGATGTTTTTTGAGACGCTTCATCATTGTTGCCCAACGAACCTGCGAGGTTCCAGTGATGCAGTTGGAGTATTTGGCAGATTATCTTGCAGAGCTATCGCTTCTAGAGTATGGCATGCTTAAGTACAACCCATCATTAATAGCTGCATCAGCCACTTTCCTGGCTAAATACATGCTACTTCCTAGGAAGAAACCTTGGAATTCTGCGCTAAGGCATTACACAGGTTACCAAGCATCAGAATTGCATGAATGTGTCAAAGGATTGCATTGGTTGTGTTGTGATGGCTGTCATAATTTACCTGCCATCAGGGAGAAATACAGTCAGCATAAGTTCAAGTTTGTGGCAAAGAAATATTGTAATCCATCAATACCTCTAGAGGTATTCCGCTGCTAA 1488 0.4308 MFTRNRRLPSSSENKSSVSETSGKVTAVKNPSTKKRSALTDVTNNRNVSLSKPMVPCVSRAAKTKKDFIAGSQKMVISGDTLQPSLSEKSSGLVLSKEGRSNSSSRPKDGVEIFLAPSTDGAVCPDFNGVIRPPKLMDISPSKSFSGSVSLSESMSTSDSMKSPEFEYINSDNVVSTKSIENRTIDILNISDSSKIAGRICGCDPTEKIEEANEVVDIDYNIKDPQFCASIVREIFEYLRVSEEIKRPSMDFMENIQKDLNASMRAILIDWLVEVAEEYSLLPDTLFLTVNYIDRYLSGNAMNRQRLQLLGVACMMIAAKYEEICAPKVEDFCYVTDNTYSKEQVLQMESAVLKFLKFEMTAPTVRCFLRRFIIVAQRTCEVPVMQLEYLADYLAELSLLEYGMLKYNPSLIAASATFLAKYMLLPRKKPWNSALRHYTGYQASELHECVKGLHWLCCDGCHNLPAIREKYSQHKFKFVAKKYCNPSIPLEVFRC* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0209 495 MobiDBLite consensus disorder prediction 80 101 - -
Apr1g0209 495 CDD CYCLIN 264 353 IPR013763 -
Apr1g0209 495 PIRSF Cyclin_A_B_D_E 1 491 IPR039361 -
Apr1g0209 495 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 24 494 - -
Apr1g0209 495 MobiDBLite consensus disorder prediction 80 109 - -
Apr1g0209 495 Pfam Cyclin, C-terminal domain 363 481 IPR004367 -
Apr1g0209 495 SUPERFAMILY Cyclin-like 363 485 IPR036915 -
Apr1g0209 495 SMART Cyclin_C_2 363 485 IPR004367 -
Apr1g0209 495 PANTHER CYCLINS 24 494 IPR039361 -
Apr1g0209 495 CDD CYCLIN 361 454 IPR013763 -
Apr1g0209 495 Gene3D - 248 361 - -
Apr1g0209 495 SMART cyclin_7 367 455 IPR013763 -
Apr1g0209 495 SMART cyclin_7 270 354 IPR013763 -
Apr1g0209 495 Pfam Cyclin, N-terminal domain 234 360 IPR006671 -
Apr1g0209 495 ProSitePatterns Cyclins signature. 265 296 IPR006671 -
Apr1g0209 495 SUPERFAMILY Cyclin-like 223 360 IPR036915 -
Apr1g0209 495 MobiDBLite consensus disorder prediction 1 49 - -
Apr1g0209 495 Gene3D - 234 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0209 Apr-Chr1 2297546 2304207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0209 82 493 Core Cell Cycle Gene Families AT1G44110 53.538 2.05e-156 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0209 K06627 - qsu:112028128 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0209 1 2297546 2304207 Apr1g0209 1 2297546 2304207 ECH