LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0206	ATGGCAAACTTAATGCAACAGCAACATCCAACAAGGCTTGGAGGGAGCAATCGCATAGTTGCTGTTGAAGTCACTTCTGGCAACCTTCCAAATCCTACACCAGAGGCCTCCACAGATCATGAGAAACCTGGGTGGAGAAAGTTCCTGTCCTATGTTGGTCCAGGATTCCTTGTTTCCTTGGCTTACCTTGATCCTGGGAACATGGAAACTGATCTGCAAGCAGGAGCTAACCACAGATATGAGCTGCTGTGGGTAATTCTCATTGGATTGGTGTTTGCGCTTATAATTCAGTCGTTGGCTGCAAATCTCGGCGTAACCACGGGGAAACACCTTTCAGAAATATGTAAAGTGGAGTACCCATTATTTGTGAAGTACTGCTTATGGTTATTAGCAGAGCTTGCTGTCATAGCTGCAGATATACCTGAAGTGATTGGCACAGCATTTGCGTTGAACATACTCTTCCACATTCCAGTATGGGCAGGAGTTCTGGTGACTGGGTGCAGCACCCTCTTATTTTTGGGTCTGCAAAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCGATTTTAGTTTTTATAATGGCCGGATGTTTCTTTGGGGAAATGAGTTACGTAAAGCCTCCTGCTTCTGATGTATTGAAAGGGATGTTTGTCCCAAAACTCAGCGGTCAAGGAGCCACAGGCGACGCCATTGCCCTTTTGGGTGCTCTTGTCATGCCTCACAATCTTTTCCTCCACTCTGCGTTGGTGCTCTCCAGAAAAGTACCCAGTTCCGTGCGTGGAATCAATGATGCATGTAGATATTTTCTCATAGAAAGTGGGTTCGCCCTATTTGTGGCATTTCTGATCAATATTGCAATGGTTTCTGTGTCTGGCAGTGTTTGCTCTGTCAGCAACCTTTCTGCAGAAAACGTTGATCACTGCAGTGATCTTACCCTTAACTCTGCTTCCTTTCTTCTCAAGAATGTGTTAGGAAAATCAAGCTCAACCATTTATGCCATTGCATTGCTAGCCTCAGGACAAAGTTCAGCTATAACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTTTTGGACTTAAAGATGAAAAGATGGATTAGAAACTTTATGACAAGAAGCATTGCCATAACACCTAGTCTTATTGTAGCCATCATTGGTGGTCCTACTGGAGCTGGTCGGCTAATCATTATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATACCACTCCTGAAGTTCAGCAGCAGTAGTACTAAGATGGGACCTCACAAGAATTCTATGATTATCATTGTCATCTCATGGTTACTAGGCTTTGGAATCATCGGTATCAATATATACTACCTCAGCACATCCTTTGTGGGTTGGCTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTCATTGGAATCATAGTGTTTCCACTAATGGCACTTTATGTTGTTGCAGTAATCTACTTAACTTTCAGAAAAGACACTGTAAAGACATTTATAGAGACAAAGAATGAACCAGCAATGCAAACCCACATGGAAAAGGGATTTATGAATAATGGTCAGTTAGAGTTGAGTCATGTTCCTTATAGAGAAGACTTAGCTGATATCCCATTACCAGAATAG	1629	0.4273	MANLMQQQHPTRLGGSNRIVAVEVTSGNLPNPTPEASTDHEKPGWRKFLSYVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWVILIGLVFALIIQSLAANLGVTTGKHLSEICKVEYPLFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLVTGCSTLLFLGLQRFGVRKLELLISILVFIMAGCFFGEMSYVKPPASDVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINIAMVSVSGSVCSVSNLSAENVDHCSDLTLNSASFLLKNVLGKSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKRWIRNFMTRSIAITPSLIVAIIGGPTGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWLLGFGIIGINIYYLSTSFVGWLIHSSLPKVANVFIGIIVFPLMALYVVAVIYLTFRKDTVKTFIETKNEPAMQTHMEKGFMNNGQLELSHVPYREDLADIPLPE*	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0206	542	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	38	542	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	Hamap	Divalent metal cation transporter MntH [mntH].	34	456	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PANTHER	METAL TRANSPORTER NRAMP5	38	542	-	-
	Apr1g0206	542	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	46	422	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	Pfam	Natural resistance-associated macrophage protein	69	430	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	127	153	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	155	174	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	180	201	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	230	253	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	340	359	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	368	385	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr1g0206	542	PRINTS	Natural resistance-associated macrophage protein signature	400	419	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0206	Apr-Chr1	2271844	2276278	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0206	15	542	Inorganic Solute Cotransporters	AT1G15960	60.227	0.0	630

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0206	K21398		-	gmx:100787785	948.732

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr1g0206	1	2271844	2276278	Apr1g0206	1	2271844	2276278	ECH