Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0197 ATGGAGATTGTGGACACCAGAAAACTACAGCTACAACCACAACAACAAAAACTGCTGCAACAGCCGCAGCAACATTTTCATGTGTTGGCAGTGGACGACAGTGTCATAGATATGAAGCTTTTGGAGAGGCTCCTCAGAGGTTCCTCATGCAAAGTTACTTGTGTTGACTCTGGAGATAAGGCTTTGAAATATCTTGGTCTAATTGATGGCCTCGATGATACTTCCTCAACATCTTTAGAATCATTACCAGCCTCTCCTCCAGCTCAACCATTACAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCAGGGATGAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTCGTGATTATGTCATCAGAAAATGAACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGGGCTGAGGAGTTTCTGTTGAAGCCTCTTCAGTTATCGGATTTGGACAAGCTTCAGCCGTATTTTCTGAAATCACTTGATGATTCTTGTCAACAAGAATCTGCGAACAGTTCCATAGATTCGAACAATGACAATCTCATCCACACCAACAATAACAGTAATAATAACAATAACAGTATTAGCAAAAGAAAGGCCATGTCTCCTGAGCCTCAAGAAAGATCAAGACCCAAAATCAAAGGGTTGGCGGTGGTGTAA 696 0.421 MEIVDTRKLQLQPQQQKLLQQPQQHFHVLAVDDSVIDMKLLERLLRGSSCKVTCVDSGDKALKYLGLIDGLDDTSSTSLESLPASPPAQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENEPSRISMCLEGGAEEFLLKPLQLSDLDKLQPYFLKSLDDSCQQESANSSIDSNNDNLIHTNNNSNNNNNSISKRKAMSPEPQERSRPKIKGLAVV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0197 231 Pfam Response regulator receiver domain 97 163 IPR001789 GO:0000160
Apr1g0197 231 SUPERFAMILY CheY-like 26 165 IPR011006 -
Apr1g0197 231 SMART REC_2 26 166 IPR001789 GO:0000160
Apr1g0197 231 MobiDBLite consensus disorder prediction 180 231 - -
Apr1g0197 231 MobiDBLite consensus disorder prediction 180 212 - -
Apr1g0197 231 CDD REC_typeA_ARR 28 165 - -
Apr1g0197 231 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 11 230 - -
Apr1g0197 231 Gene3D - 27 221 - -
Apr1g0197 231 ProSiteProfiles Response regulatory domain profile. 27 170 IPR001789 GO:0000160
Apr1g0197 231 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 230 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0197 Apr-Chr1 2162661 2165774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0197 23 172 Response Regulator Gene Family AT3G57040 58.278 2.43e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr1g0197 Response_reg 6.8e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0197 K14492 - gmx:100801334 317.39