Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0189 ATGGCAGAGACCATCAATGCCATGGATATCGACAGCGACGACAACACTTTCTCTGCAAGCCTCGACAAGGCTAAAATTGTGATGGTGGGCAACCTTCCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATACCGCCCTCAGTCCCTCGACGACGTGGCTGCTCACCGTGACATCGTGGATACCATTGATAGGTTGACCACTGAGAACAGATTACCTCATCTTCTATTGTATGGTCCTCCTGGCACGGGCAAAACATCTACTATTCTTGCTGTGGCTCGCAAACTATATGGTTCACAGTACCGTAATATGATTTTGGAGCTCAATGCATCGGATGACCGAGGAATTGATGTTGTGAGACAGCAGATTCAAGATTTTGCCAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTAATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATTTGTAATCATGTAAACAAGATTATTCCTGCACTGCAATCAAGATGCACTCGTTTTCGGTTTGCCCCTCTTGATACTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGACAGTGGCTTAGCAGCTCTTGTTCGACTTAGCAATGGTGATATGAGGAAGGCTTTGAACATTCTTCAGTCAACACATATGGCTTCTCAGCAGATTACAGAAGAAGCTGTTTACCTGTGCACTGGCAATCCTTTGCCAAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAGTTTGCAGATAGCTTTAAAAGGATACATGAAATGAAGACCGGAAAAGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGCTGTTCGAGTACAGTTGATGAATGATTTGGCAGACATAGAGTACAGGTTAAGTTTTGGGTGCAATGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCCCTGGTTGCAGCTGCTACATAA 1086 0.4337 MAETINAMDIDSDDNTFSASLDKAKIVMVGNLPAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDTVHVTERLKHVIKAEGLDVQDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIHEMKTGKGLALVDIVREVTMFVFKIKMPPAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0189 361 SUPERFAMILY post-AAA+ oligomerization domain-like 262 352 IPR008921 GO:0003677|GO:0006260
Apr1g0189 361 Gene3D - 200 261 - -
Apr1g0189 361 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 357 - -
Apr1g0189 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 255 IPR027417 -
Apr1g0189 361 Pfam Replication factor C C-terminal domain 262 348 IPR013748 -
Apr1g0189 361 Gene3D - 34 196 IPR027417 -
Apr1g0189 361 CDD AAA 58 196 - -
Apr1g0189 361 CDD HLD_clamp_RFC 197 259 - -
Apr1g0189 361 Gene3D - 262 359 - -
Apr1g0189 361 PANTHER REPLICATION FACTOR C SUBUNIT 5 34 357 - -
Apr1g0189 361 Pfam ATPase family associated with various cellular activities (AAA) 74 194 IPR003959 GO:0005524|GO:0016887
Apr1g0189 361 SMART AAA_5 70 200 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0189 Apr-Chr1 2086945 2093235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0189 1 360 Core DNA Replication Machinery Family AT1G77470 78.591 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0189 K10756 - gmx:100805231 650.973