LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0189	ATGGCAGAGACCATCAATGCCATGGATATCGACAGCGACGACAACACTTTCTCTGCAAGCCTCGACAAGGCTAAAATTGTGATGGTGGGCAACCTTCCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATACCGCCCTCAGTCCCTCGACGACGTGGCTGCTCACCGTGACATCGTGGATACCATTGATAGGTTGACCACTGAGAACAGATTACCTCATCTTCTATTGTATGGTCCTCCTGGCACGGGCAAAACATCTACTATTCTTGCTGTGGCTCGCAAACTATATGGTTCACAGTACCGTAATATGATTTTGGAGCTCAATGCATCGGATGACCGAGGAATTGATGTTGTGAGACAGCAGATTCAAGATTTTGCCAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTAATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATTTGTAATCATGTAAACAAGATTATTCCTGCACTGCAATCAAGATGCACTCGTTTTCGGTTTGCCCCTCTTGATACTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGACAGTGGCTTAGCAGCTCTTGTTCGACTTAGCAATGGTGATATGAGGAAGGCTTTGAACATTCTTCAGTCAACACATATGGCTTCTCAGCAGATTACAGAAGAAGCTGTTTACCTGTGCACTGGCAATCCTTTGCCAAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAGTTTGCAGATAGCTTTAAAAGGATACATGAAATGAAGACCGGAAAAGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGCTGTTCGAGTACAGTTGATGAATGATTTGGCAGACATAGAGTACAGGTTAAGTTTTGGGTGCAATGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCCCTGGTTGCAGCTGCTACATAA	1086	0.4337	MAETINAMDIDSDDNTFSASLDKAKIVMVGNLPAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYRNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDTVHVTERLKHVIKAEGLDVQDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIHEMKTGKGLALVDIVREVTMFVFKIKMPPAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT*	362

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0189	361	SUPERFAMILY	post-AAA+ oligomerization domain-like	262	352	IPR008921	GO:0003677\|GO:0006260
	Apr1g0189	361	Gene3D	-	200	261	-	-
	Apr1g0189	361	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	34	357	-	-
	Apr1g0189	361	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	38	255	IPR027417	-
	Apr1g0189	361	Pfam	Replication factor C C-terminal domain	262	348	IPR013748	-
	Apr1g0189	361	Gene3D	-	34	196	IPR027417	-
	Apr1g0189	361	CDD	AAA	58	196	-	-
	Apr1g0189	361	CDD	HLD_clamp_RFC	197	259	-	-
	Apr1g0189	361	Gene3D	-	262	359	-	-
	Apr1g0189	361	PANTHER	REPLICATION FACTOR C SUBUNIT 5	34	357	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0189	Apr-Chr1	2086945	2093235	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g0189	1	360	Core DNA Replication Machinery Family	AT1G77470	78.591	0.0	587

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0189	K10756		-	gmx:100805231	650.973

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