Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0188 ATGGCATCGGAGCTTCAATTGCCACCGGGATTCAGATTCCATCCGACGGACGAGGAACTCGTGATGCACTACCTCTGCCGCAAATGCGCGTCGCAACCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAGTACGATCCTTGGGACCTACCAGGATTAGCTACCTACGGAGAGAAGGAATGGTACTTCTTCTCACCCCGGGACCGGAAATACCCGAACGGTTCGAGGCCGAACCGTGCGGCAGGAACCGGTTACTGGAAGGCAACCGGTGCGGATAAACCCATTGGTAACCCGAAACCGGTTGGGATAAAAAAGGCTTTGGTGTTTTACTCAGGGAAAGCTCCGAAAGGGGACAAAACGAATTGGATCATGCACGAGTATCGTCTCGCCGATGTAGATCGTTCCGTTCGCAAAAAGAACAGCCTAAGGCTGGATGACTGGGTGCTTTGCCGTATTTACAATAAGAAGGGCACAATCGAGAAACAGCCAAGCAACGATGCTGTTAGCCGGAAAACAGAATCCTCGGAAATCGAAGATAAGAAGCCGGAGATTTTAACGCGTAGCGGCGCTTTCCCGCCGCCACCTCCGCCGCAAGCCACGGCGGCGATGACGGATTACTTGTACTTCGATCCTTCGGATTCAATTCCGAAGCTGCACACGGACTCGAGCTGTTCGGAGCAGGTGGTTTCGCCGGAGCTCGCGAGCGAGGTGCAGAGCGAGCCCAAGTGGAGCGAGTGGGAGAAGAACCTCGAATTTTCGTATAATTACGTTGATGCCACTCTCAACAATGGCTTCGGGAATCACATGTCGCCGTTACAGGACATGTTCATGTACTACACCAAGCCCTATTGA 858 0.5326 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLATYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGNPKPVGIKKALVFYSGKAPKGDKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKQPSNDAVSRKTESSEIEDKKPEILTRSGAFPPPPPPQATAAMTDYLYFDPSDSIPKLHTDSSCSEQVVSPELASEVQSEPKWSEWEKNLEFSYNYVDATLNNGFGNHMSPLQDMFMYYTKPY* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0188 285 MobiDBLite consensus disorder prediction 163 199 - -
Apr1g0188 285 MobiDBLite consensus disorder prediction 173 187 - -
Apr1g0188 285 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Apr1g0188 285 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Apr1g0188 285 PANTHER NAC TRANSCRIPTION FACTOR 56 2 268 - -
Apr1g0188 285 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Apr1g0188 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 268 - -
Apr1g0188 285 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0188 Apr-Chr1 2081482 2084393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0188 1 285 NAC Transcription Factor Family AT1G01720 72.241 7.75e-152 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0188 NAM 4.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0188 - - gmx:732553 504.597