Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0187 ATGGAACGTGAGGAGGGGAAACAATCTTCCCACAAGAACCCATACATTGAACTTGAGGAAGTCAACTTCGATTTTATTCTAGCAATTGGCTTGCAAGAACAAGAGAGAGCATTCACAATGCTAGCAACTATTGAAAGTGAAAGTGATGAAGATGTAAGGGACTCCTCTTTTGACAATGATGATGGAGACCCTGATTTTATAGAGAGCCAAGAGTTTGAAGCCGACCTTCAGTTCCATGAAAGTGAAGGAAGCAATGATGATGATGATGAAATGGAATTGGAAGAAGATGACATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTGGGAGAGTTTATAGGAGAAGAGACAAGAGGATTATCAGCAAATGAAATCTCTTTGTGCTTATACCCTTATAATTGCCATTCTCCTGAAAGCAAAACTGGCATTGATCGCTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTGGCACTTCAGTGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCCAATACCAATCCTTGA 600 0.3983 MEREEGKQSSHKNPYIELEEVNFDFILAIGLQEQERAFTMLATIESESDEDVRDSSFDNDDGDPDFIESQEFEADLQFHESEGSNDDDDEMELEEDDIDPDELSYEELIELGEFIGEETRGLSANEISLCLYPYNCHSPESKTGIDRCVICQVEYEEGEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNTNP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0187 199 Pfam Ring finger domain 147 188 IPR001841 -
Apr1g0187 199 MobiDBLite consensus disorder prediction 43 95 - -
Apr1g0187 199 SUPERFAMILY RING/U-box 147 195 - -
Apr1g0187 199 MobiDBLite consensus disorder prediction 51 70 - -
Apr1g0187 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 196 IPR045191 GO:0061630
Apr1g0187 199 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Apr1g0187 199 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 196 - -
Apr1g0187 199 SMART ring_2 148 188 IPR001841 -
Apr1g0187 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0187 Apr-Chr1 2073365 2074120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0187 85 192 C3H Transcription Factor Family AT3G63530 50.909 1.15e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0187 K19045 - gmx:100526881 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0187 1 2073365 2074120 Apr9g0811 9 15586649 15587301 PCT