Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0173 ATGGAGGACCAAAATGCTAGTGGTAAGTTGAGCAAGGGGCTTCGCAAGGTGAAGCCTTACCTTGCTATATTGTCCCTTCAATTTGGCTACTCAGGGATGTATATAATCACTATGGTTTCTTTCAAACATGGCATGAGCCATTGGATACTCTCAGTCTATCGTCACGTGGTTGCCGCTGTTATTATAGTTCCTTTTGCCCTTGTCCTTGAAAGAAAAATAAGGCCAAAGATGACTCTTCCCATCTTCCTCAGAATAGTTGCGCTCGGTTTCCTTGAGCCAGTGCTAGATCAGAACTTGTACAACATGGGGATGAAGATGACCTCAACAACGTTTGCATCCGCCACTGTTAATGTCCTCCCAGCCATTACTTTTATAATGGCACTCATTTTCAGGTTAGAGACGGTCAACTTGAGAAAATTTCACAGCCTAGCCAAGGTCATTGGAACCGTTATTACAGTTTCAGGAGCCATGGTTATGACTCTGTACAAGGGTCCTGCCTTCCAGATCATAAAGGGTGGAGGAGCAATCAGCCACCATAGCAACGCCAGTAGCAGCACCGATTCCTCTGAGCAGCACTGGGCCGTCGGCACAGTAATGCTCATATCAAGTTGTGCTAGTTGGGCTGGTTTCTTCATTTTGCAATCATTCACTTTGAAGAAGTACCCAGCAGAGCTCTCGTTGACAGCTTGGATTTGCGTGATGGGTATCATCGAGGGTTCAATCGCATCCTTTATATTTGAAAGGGACATGAGCTTGTGGGCCATAGGCTGGGACTCGAGGCTTCTTGCTTGTGTTTATTCTGGGGTGATATGCTCTGGAATGGCATACTATGTACAAGGGGTGGTAACTAGAGAACGTGGACCAGTGTTTGTGACTTCTTTCAGCCCTTTATGTATGATTATCACCGCTGCATTGGGTTCCCTTGTCTTAGCTGAGCAAGTTCATTTGGGAAGTATATTTGGAGCAATTCTCATTGTGTGCGGACTTTACACCGTGGTGTGGGGCAAAAGCAAAGACCGTCAAAACACAACAGACATAGGGAAAGGCGAAAGCCAAGAATTGCCAATAAAGGATGGTACAAAGTCAGCATCAGACATTTTTGACGGCCTTGAGATCAATGTTTCTGCTGAGGTGTTGAAGAAAGGAGCAGGGAAAAATGTTCCATCAGTAACAAAATCATGA 1182 0.4526 MEDQNASGKLSKGLRKVKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAVIIVPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLETVNLRKFHSLAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAISHHSNASSSTDSSEQHWAVGTVMLISSCASWAGFFILQSFTLKKYPAELSLTAWICVMGIIEGSIASFIFERDMSLWAIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAILIVCGLYTVVWGKSKDRQNTTDIGKGESQELPIKDGTKSASDIFDGLEINVSAEVLKKGAGKNVPSVTKS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0173 393 Pfam EamA-like transporter family 29 152 IPR000620 GO:0016020|GO:0016021
Apr1g0173 393 Pfam EamA-like transporter family 196 333 IPR000620 GO:0016020|GO:0016021
Apr1g0173 393 PANTHER WAT1-RELATED PROTEIN 13 365 - -
Apr1g0173 393 PANTHER WAT1-RELATED PROTEIN 13 365 IPR030184 GO:0016021|GO:0022857
Apr1g0173 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Apr1g0173 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 257 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0173 Apr-Chr1 1958984 1963387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0173 14 373 Nodulin-like Gene Family AT4G08300 64.208 2.12e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0173 - - gmx:100783910 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0173 1 1958984 1963387 Apr1g0173 1 1958984 1963387 ECH