Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0164 ATGTCAATGAGTCCACCAAGAGAGAGAAACAACGGCGCAATGCCCAACGAGCTCTACTGGTGCTTCCAGTGCAACCGCATGGTCCGTCCCGCACCCGATAACCCCCTGGAAATCACGTGCCCACGCTGCTTCGGGCAATTCATCATGGAATTAAACATGCCCAGGCCAAGGCTCTTGGTGGATTTCACCACACCCGATCCCTCTCCAGAAGCGCGTTTGCTCGAAGCGCTTTCTCTCATGCTCGACCCTCCCATCCGACGCTGGGCCCACCCCGATCCACAAGAGGTTCCCGTCCTTCGGACCAGGCGCCGTTCTCGACACCGCGGCTCCACCCGACCCGAAAGCTCCGAACCCGAACCCGGAATCCAACACCGTCCCCGCACATGGATCATTCTTCGTCCTTTGGATCCTTCGGAGCCGTTCGTTCCCATTAATAATATTCCCCCGCGGGAGAGTCCACTCCCGCGCGGTGTGGACGCCAGGGACTACTACTTCGGGCCAGGGCTGAACGAACTCATCGAGCAGTTGACGGAGAACGACCGCCCAGGACCCGCGCCGGCGCCGGAGAGAGCGATAAACGCGATTCCCACTGTGAAAATCGAGACGACGCATCTGAAAGAGAATTCTCACTGTCCGGTGTGTCAGGAAGAGTTCGAAGTGGGTGGAGAAGCGAGGGAACTTGCATGCAAGCATATATATCATTCCAATTGCATTGTTCCGTGGCTGCGGCTTCACAATTCTTGCCCTGTTTGCAGACACGAGATTCCGGCGTCGTCGTCTTCTTGTTCGGAAGTGGAGGAGGAAGAGAATGAAGGTAGGTTTAGACGTTGCTTGAGGAGGTGGACCCGCCTTGCTTCTCTTTGGCCTTTCCATGCAAGGTATCGACGGGTTCATCCTCAACCAAGTGATCATGTTGCTGCCGCTTCTTCCAGGGAAGCTAATCCAAGGCAGCGCTTTTGCTGCATTCTTTAA 972 0.5617 MSMSPPRERNNGAMPNELYWCFQCNRMVRPAPDNPLEITCPRCFGQFIMELNMPRPRLLVDFTTPDPSPEARLLEALSLMLDPPIRRWAHPDPQEVPVLRTRRRSRHRGSTRPESSEPEPGIQHRPRTWIILRPLDPSEPFVPINNIPPRESPLPRGVDARDYYFGPGLNELIEQLTENDRPGPAPAPERAINAIPTVKIETTHLKENSHCPVCQEEFEVGGEARELACKHIYHSNCIVPWLRLHNSCPVCRHEIPASSSSCSEVEEEENEGRFRRCLRRWTRLASLWPFHARYRRVHPQPSDHVAAASSREANPRQRFCCIL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0164 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 17 294 - -
Apr1g0164 323 PANTHER OS03G0351800 PROTEIN 17 294 - -
Apr1g0164 323 MobiDBLite consensus disorder prediction 90 123 - -
Apr1g0164 323 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Apr1g0164 323 Pfam Ring finger domain 210 252 IPR001841 -
Apr1g0164 323 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Apr1g0164 323 SMART ring_2 211 251 IPR001841 -
Apr1g0164 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 258 IPR013083 -
Apr1g0164 323 SUPERFAMILY RING/U-box 191 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0164 Apr-Chr1 1830442 1832208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0164 183 298 C3H Transcription Factor Family AT1G68180 43.902 1.17e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0164 K11982 - gmx:100787399 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0164 1 1830442 1832208 Apr1g0164 1 1830442 1832208 ECH