Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0160 ATGCTTCTAACTGTCCAAGGGATCACAATTCTTGATAAAGGTGGGAACATCATATGGTCAACACCACCATTAAAATCAGCAGTGAATAAACTTGTGTTGACTGAGATGGGAAATATTGTCTTACTTGATCAGAGTAGTGATTCTCTTTGGGAGAGCTTCCAGCATCCAACTGACACAATTGTTATTGGACAGCGTTTACCTGTTGGGGCATCATTGACAAGTGCTGCATCCAATTCAGACTTGTCAACAGGAAATTACAAGCTCGTAGTTACTTCCTTTGATGCAATACTGCAATGGTATGGACAGACATATTGGAAACTGTCACTGGATACAAAAGCCTATAAGAATTCAAATTATGTGGCGGAATATATGTCCATAAACACTACAGGCCTTTATCTCTTTGGACAAGATGGAACAGTGCCTGTCTTTGTAGTTGGGTTGCCACTGGCTAATTTTCGAATAGCCAAAGTGGCTATTTCTGGCCAGTTTACTATTATGAGCTTTTCTGGCACTGATTGGAAGCAAGAGTTTGTGGGGCCAGATAATGGTTGTCAGACTCCTATAGCTTGTGGAAGATTAGGTTTATGTACTGAGGACTCTGTATCCTCTTCACCAGTTTGTTCTTGTCCCCCAAACTTCCACGTAGACGCAGGTAATTTTGGTGGTTGTGTGCCAAGCAATGGATCTTATTCTTTGCCATTTGCTTGTAGTTCTACTCTTAACAATAGTCAATCAAATTCTTCAGTTGTTTCATTTTTTAAAATGGGGAATGTAGATTACTTTGGCAGGGTTTACTCTGATCCAGTTTTTTATGAAATGAATTTATCTGTCTGTCAAGATCTTTGTTCCACTAACTGTTCCTGCTTGGGGATTTTCTATAAAAGCTCATCTGGTTCTTGCTATGTGGTTGAGGATAATTTGGGATCCATTCAGTCAAGTAATGGAGGTAAAAATGATCTAGTGGGATACATTAAGGTTATTGCCACAGCCACAACCGATATTGATGATGATGACAGTGATGGTGGACAAACTTCTCAAAATGGGGGGTTTCCTGTGGTAGCAGCAGTGATGTTACCTGCCATTGGGTTCATTGTTTTAATGGCTCTAGTTGTTCTCATGTGGAGAAGATTGATACTGTCAAAGAGGCAAGAAATGAAATTAGGGAAACCCAGTTCACATTCTTCTGGGGACCTGGAGGCCTTCCACATTCCAGGCTTGCCTTCAAGATTTGACTTTGAAGAGCTTGAGGAGGCTACTGAAAACTTCAAGACTCTAATAGGATCAGGTGGGTTTGGAGCTGTATACAAGGGTGTGTTGCATGATAAGTCTATTGTGGCAGTAAAGAAAATAGTGAACATAGGCATTCAAGGGAAAAGAGATTTCTGCACTGAGATTGCTGTTATTGGAAACATTCACCATGTTAACTTGGTCAAATTGAAGGGATTTTGTGCTCAAGGGAGACACCGTTTGTTGGTTTATGAGTACATGAATCGTGGATCCTTGGACCGAAACCTCTTTGGTGGTGGACCCGTTTTAGAATGGCAAGAGAGGTTTGATGTGGCCCTTGGAACAGCACGTGGACTTGCTTACTTGCATAGTGGTTGTGAGCAAAAGATAATTCATTGTGACATCAAACCCGAGAACATTCTCTTGCAAGATCAATTTCAGGCTAAGATATCTGATTTTGGACTCTCGAAACTCCTGAGTCCTGAACAGTCTGGTTTATTCACCACAATGAGAGGCACTCGTGGTTATCTTGCTCCTGAGTGGCTTACTAACTCTGCAATCACCGAAAAAACTGATGTGTATAGTTTTGGAATGGTGCTTCTTGAACTCGTTAGTGGAAGGAAAAACTGTTATTTTAGGTCGAGAAGCCATAGCATGGATGAAAGCAACAGTGGTGGGGGCAATTCTGATGCCTCATCAACAACTGGGTTGGTTTATTTTCCACTATTTGCATTGGAGATGCATGAGCAAAGTAGTTACTTGGAGTTGGCTGATCCAAGGCTAGAAGGGCGTGTTACATATGAAGATGTGGAGAAAATGGTTCGTATTGCATTGTGTTGTGTTCATGAAGAACCAGCACTTAGGCCTAACATGGTTACTGTTGTTGGCATGTTGGAAGGTGGCACTCCGTTGCCACAGCCAAGGATAGAATCTTTGAACTTTCTTCGCTTTTATGGTCGTAGGTTTACTGAGGCTTCCACTATAGCAGAAGAAAATGAGTATGGCTCTAGGCTGCAACAACTAGCACGTGATTCTATAAGCATGGCAAGTTCACCAACTGGTTTTTCATACATGTCTTCACAAAATATCTCAGGGCCAAGATAG 2331 0.4157 MLLTVQGITILDKGGNIIWSTPPLKSAVNKLVLTEMGNIVLLDQSSDSLWESFQHPTDTIVIGQRLPVGASLTSAASNSDLSTGNYKLVVTSFDAILQWYGQTYWKLSLDTKAYKNSNYVAEYMSINTTGLYLFGQDGTVPVFVVGLPLANFRIAKVAISGQFTIMSFSGTDWKQEFVGPDNGCQTPIACGRLGLCTEDSVSSSPVCSCPPNFHVDAGNFGGCVPSNGSYSLPFACSSTLNNSQSNSSVVSFFKMGNVDYFGRVYSDPVFYEMNLSVCQDLCSTNCSCLGIFYKSSSGSCYVVEDNLGSIQSSNGGKNDLVGYIKVIATATTDIDDDDSDGGQTSQNGGFPVVAAVMLPAIGFIVLMALVVLMWRRLILSKRQEMKLGKPSSHSSGDLEAFHIPGLPSRFDFEELEEATENFKTLIGSGGFGAVYKGVLHDKSIVAVKKIVNIGIQGKRDFCTEIAVIGNIHHVNLVKLKGFCAQGRHRLLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKIIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYFRSRSHSMDESNSGGGNSDASSTTGLVYFPLFALEMHEQSSYLELADPRLEGRVTYEDVEKMVRIALCCVHEEPALRPNMVTVVGMLEGGTPLPQPRIESLNFLRFYGRRFTEASTIAEENEYGSRLQQLARDSISMASSPTGFSYMSSQNISGPR* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0160 776 PIRSF SRK 1 761 IPR024171 GO:0004674
Apr1g0160 776 SUPERFAMILY Protein kinase-like (PK-like) 399 707 IPR011009 -
Apr1g0160 776 Pfam Protein kinase domain 423 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0160 776 CDD STKc_IRAK 426 709 - -
Apr1g0160 776 Pfam S-locus glycoprotein domain 158 214 IPR000858 GO:0048544
Apr1g0160 776 Gene3D Transferase(Phosphotransferase) domain 1 496 712 - -
Apr1g0160 776 CDD PAN_AP_plant 252 326 - -
Apr1g0160 776 Pfam D-mannose binding lectin 7 67 IPR001480 -
Apr1g0160 776 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Apr1g0160 776 ProSiteProfiles PAN/Apple domain profile. 236 328 IPR003609 -
Apr1g0160 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 107 IPR036426 -
Apr1g0160 776 ProSiteProfiles Protein kinase domain profile. 420 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0160 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Apr1g0160 776 SMART serkin_6 420 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0160 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 776 - -
Apr1g0160 776 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 776 - -
Apr1g0160 776 Gene3D Phosphorylase Kinase; domain 1 397 495 - -
Apr1g0160 776 Gene3D - 3 116 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0160 Apr-Chr1 1773141 1775663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0160 403 716 Receptor kinase-like Gene Family AT5G20050 42.508 9.93e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr1g0160 Pkinase 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0160 - - aprc:113853223 1504.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0160 1 1773141 1775663 Apr1g0160 1 1773141 1775663 ECH