Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0155 ATGGCCGAGAGTCGAAGATCTACGGGCACAGTCAAGTGGTTCAACGCTCAGAAGGGTTTCGGATTCATAACTCCACAAGATGGCTCCGATGATCTCTTCGTTCACTTCACTTCCATCCGATCTGACGGCTACCGGACCTTATCGGATGCTCAGTCCGTCGAGTTTCTCGTTGATTTCGGCGACGACGGCCGAGCCATGGCTGTCGACGTTACCTCCGCCGTTAGATCTCGCCGTTTTGGCGGTTTTCGAGGCGGCGGAGGCAGGGGAAGAGGAGGAGGACGCTTCGGCGGCGGGGAAGTTAGAGGCGGAGGGATCGGACGGAGAGGAGGAGGTTACGGCGGTGGTGGAGGTCCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCGAGAGATTGTTATCAGGGACAGGGTGGTGGCGATGGTAGGAATCGGAGACGCGGCGGCGGCGGTGGCGGAGGAGGAGGATGTTTTAACTGTGGCGAGGAAGGGCATTTTGCGAGAGAATGTCCGAATGTTGGAAAATGA 528 0.5663 MAESRRSTGTVKWFNAQKGFGFITPQDGSDDLFVHFTSIRSDGYRTLSDAQSVEFLVDFGDDGRAMAVDVTSAVRSRRFGGFRGGGGRGRGGGRFGGGEVRGGGIGRRGGGYGGGGGPECYNCGRIGHLARDCYQGQGGGDGRNRRRGGGGGGGGGCFNCGEEGHFARECPNVGK* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0155 175 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Apr1g0155 175 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 173 - -
Apr1g0155 175 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 Pfam Zinc knuckle 156 172 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 SUPERFAMILY Retrovirus zinc finger-like domains 109 173 IPR036875 GO:0003676|GO:0008270
Apr1g0155 175 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Apr1g0155 175 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Apr1g0155 175 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Apr1g0155 175 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Apr1g0155 175 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Apr1g0155 175 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 Gene3D - 115 148 - -
Apr1g0155 175 Gene3D - 149 175 - -
Apr1g0155 175 SMART csp_8 8 73 IPR011129 GO:0003676
Apr1g0155 175 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Apr1g0155 175 Gene3D - 1 71 IPR012340 -
Apr1g0155 175 ProSiteProfiles Zinc finger CCHC-type profile. 157 172 IPR001878 GO:0003676|GO:0008270
Apr1g0155 175 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0155 Apr-Chr1 1738592 1740365 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Apr1g0155 CSD 2.1e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0155 - - gmx:100815773 206.838