Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0148 ATGGAGGATTTGCAGAGTGCCCTGCAGGATCGTAACTTGTCAGTTTCCACTATCCCAGAAAAGGGTCGTTCTCTCTTTGCAATAAGGGATTTCAATCCAGGCGAGGTTATTATAAGTCAAGACCCTTATGTTTGTGTTCCAAATAACTCCGACCAAAAAAGGTGTGATGGATGTTTCGCCACAACTAACCTTAGCAGGTGCTCAAGTTGCAAACTTGTATCCTATTGTGGAACTTCATGCCAGAAGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGCCCTCTCGAGGTTGGACAAGGACAAGAGGAAATCTGTCACACCATCTATACGGTTAATGGTGAAACTTTATGTTCGAAGGAAGTTGCAAAATGACAAGGTCATCCCAAGCACTGCTACAGACAACTACAAATTGGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAGGAGCAGCTGGTGCTATATGCACAGATGGCTAATCTTGTAAACTTCATAGTACAATGGCCTGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCCAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCCGTGGGAACAGGATTGTATCCTGTTATTTCTATCATCAATCACAGTTGCTTGCCCAATTGCGTATTGGTTTTTGACGGAAGGTCAGCATTTGTACGTGCTGTGCAGCATATACCCAAAGGTACTGAGGTAATGATAAGTTATATAGAGACTGCTGGAAGCACTATGACACGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGCACATGTCCCCGGTGTTCTAAAGTGGGTCAGTATGATGATATTCAAGAAAGTGCAATTCTAGAAGGATACAGATGCAAAAATGAAAAATGTGGTGGTTTCTTGCTTCGCACATCTGATGGAAATGGATTCCAATGCCAAGAATGTGGAATGGTTAGGGACAAGGAGGAGGTAAAGAAAATTGCAAATGAAATAAAATTGCTATCTGAAGAAGCTTCCAAGTCTTCCTCCGCTTGCAATTATCAAGGAGCTATTTCCACATATAAAAGTATTGAGAAACTGCAAACAAAACTCTATCATCCTTTCTCAATCAACTTGATGCAAACTAGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCGGCTGTTCACCCTCTGCTCGGTTTGCAATATTATACTTGCGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCTGTGGATATACTACGGATTACTCATGGCACTAATACACCTTTCGTGAAGGAACTCTTGATGAAATTGGAAGATGCCTGTGCTGAAGCGTCTTACAAACTTTCCTCTAGAGTAGTAGAAAAGTAG 1449 0.4134 MEDLQSALQDRNLSVSTIPEKGRSLFAIRDFNPGEVIISQDPYVCVPNNSDQKRCDGCFATTNLSRCSSCKLVSYCGTSCQKSEWKLHRLECEALSRLDKDKRKSVTPSIRLMVKLYVRRKLQNDKVIPSTATDNYKLVEALVAHMSDITEEQLVLYAQMANLVNFIVQWPEINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNCVLVFDGRSAFVRAVQHIPKGTEVMISYIETAGSTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYRCKNEKCGGFLLRTSDGNGFQCQECGMVRDKEEVKKIANEIKLLSEEASKSSSACNYQGAISTYKSIEKLQTKLYHPFSINLMQTREKILKSLMELEHWREALAYCKLTIPFYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFVKELLMKLEDACAEASYKLSSRVVEK* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0148 482 SUPERFAMILY TPR-like 339 445 IPR011990 GO:0005515
Apr1g0148 482 ProSitePatterns Zinc finger MYND-type signature. 55 92 IPR002893 -
Apr1g0148 482 SUPERFAMILY SET domain 10 246 IPR046341 -
Apr1g0148 482 Pfam MYND finger 55 92 IPR002893 -
Apr1g0148 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 471 - -
Apr1g0148 482 Gene3D - 54 104 - -
Apr1g0148 482 Gene3D SET domain 24 273 IPR046341 -
Apr1g0148 482 Gene3D Tetratricopeptide repeat domain 400 477 IPR011990 GO:0005515
Apr1g0148 482 Coils Coil 318 338 - -
Apr1g0148 482 Gene3D - 105 189 - -
Apr1g0148 482 SMART set_7 11 253 IPR001214 GO:0005515
Apr1g0148 482 ProSiteProfiles SET domain profile. 11 247 IPR001214 GO:0005515
Apr1g0148 482 ProSiteProfiles Zinc finger MYND-type profile. 55 92 IPR002893 -
Apr1g0148 482 Pfam SET domain 22 246 IPR001214 GO:0005515
Apr1g0148 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 471 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr1g0148 SET 9.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0148 K11426 - gmx:100789518 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0148 1 1679830 1686319 Apr1g0148 1 1679830 1686319 ECH