Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0141 ATGCATCATCTAGCTCGAATTTTTGACCCCAGCAAGATAAGCCATACCATGGATCGCAAGAACCCCCGAAGAAAACCCAAGCTCGAGCGCCGAAATGCGCACAAGTACTTCGAATACGACGCCGGATCGTCTTCATCCTCGCTCGACGACTCCTCTGGCTCGCTCTACACTCGCTCCATGGAGTTCTACGACCGCACCAGCTTTCGAATTGAGGGAGTCGAAGGTGAGTTCGATCGTATTTGCCGGAGTTTGGGGCTCTCAGGGCCAGAAGACTTCTCTATTCCCGCGGCGACATGGGAGGCAATGAAGGTCCGATCCTCTTCGGATATTCTTCCACGGTTGAAGCTCGACAAGTTGGATGTTCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGAAGGTAAACGAGGAGAGAAAATCACCAAAGGAAGGTGAATTGAGAGAAATATATGAAGATAGGATTAGAGTTAGAAGCGTGGATGATTCCCCCACTGAAACTAGTGTTAGTGGCGGCGGCATCAACGGGGCTCGTCCACCGATGCTAAAGCCGCCGCCGGGGACGAGGGTTCAGGTGGTGGATAACGCGAGTTCGACTTGGGACCTTTTTAGGGATTTGGCTCCGAAAGGGGAAGGGGTGCGATTGAACCATTCAGGGGATGAGAGGGAAGTAGTTAGAGAAGCAGAGGCAAAAGAAGAAGGGCAAGATGGTATGGTAAGTCCGAAGAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGGGTGGATAATGCGGAGTCGTGTTCGTTTTCCACGTCAAACGAAGATGATTCTTCTAGCACTAACTCGGACCCTAGGTCCAATAATATATCTCCTAACGCCAGAATCAAGCGTATTATTACCGCCGGCAGCTGGCAGAAGGGTGAGTTTTTGGGGGGTGGCTCGTTTGGCTCCGTCTATGAAGGAATTTCTGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCGCTGCTTGATCAACGCGATCAGGGAAAGCAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGTCAGTTTGAACACGAGAATATTGTTCAATACTATGGCACAGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGCTCGTAACCAAAGGTTCCCTTAGAAGCCTCTATCAGAGATATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTTTGCATGGTTTGAAGTATCTTCATGATCGAAATGTGGTTCATAGGGACATTAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTTAAATCGTGCAAGGGAACAGCATACTGGATGGCTCCCGAGGTTGTAAAAGGAAAGAACCAAGGTTATGGGCTTCCAGCTGACATGTGGAGTCTGGGATGCACTGTATTGGAGATGTTAACACGTGAAATTCCATACTCGAATTTGGAATGGATGCAGGCATTATTTAGAATTGGAAAAGGCGAGCGACCTCCTATTCCTGATTCTCTTTCAAAAGATGCACGGGATTTTATGCTGCAGTGCCTTCAAGTTAATCCAAATGATCGTCCCACTGCTCCTCAACTTTTAGACCATCCATTTGTCCAAAGGCCACTTTCCCAGTCCTCTGGTTCTTCATTTCCTTATATTCATGGCCGCAAGGGTTAA 1743 0.4699 MHHLARIFDPSKISHTMDRKNPRRKPKLERRNAHKYFEYDAGSSSSSLDDSSGSLYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAATWEAMKVRSSSDILPRLKLDKLDVQEKEEEEEEEEEEEEEEEEEAKVNEERKSPKEGELREIYEDRIRVRSVDDSPTETSVSGGGINGARPPMLKPPPGTRVQVVDNASSTWDLFRDLAPKGEGVRLNHSGDEREVVREAEAKEEGQDGMVSPKREEEEEEEEEEGVDNAESCSFSTSNEDDSSSTNSDPRSNNISPNARIKRIITAGSWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQRDQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQRYTLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVKGKNQGYGLPADMWSLGCTVLEMLTREIPYSNLEWMQALFRIGKGERPPIPDSLSKDARDFMLQCLQVNPNDRPTAPQLLDHPFVQRPLSQSSGSSFPYIHGRKG* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0141 580 ProSiteProfiles Protein kinase domain profile. 307 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0141 580 MobiDBLite consensus disorder prediction 1 17 - -
Apr1g0141 580 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 187 573 - -
Apr1g0141 580 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 63 159 - -
Apr1g0141 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Apr1g0141 580 MobiDBLite consensus disorder prediction 123 142 - -
Apr1g0141 580 Pfam Protein kinase domain 308 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0141 580 Coils Coil 114 150 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 219 251 - -
Apr1g0141 580 SMART serkin_6 307 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0141 580 MobiDBLite consensus disorder prediction 267 294 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 559 580 - -
Apr1g0141 580 Gene3D Transferase(Phosphotransferase) domain 1 305 573 - -
Apr1g0141 580 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 63 159 - -
Apr1g0141 580 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 187 573 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 121 200 - -
Apr1g0141 580 SUPERFAMILY Protein kinase-like (PK-like) 284 564 IPR011009 -
Apr1g0141 580 MobiDBLite consensus disorder prediction 219 294 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 252 266 - -
Apr1g0141 580 MobiDBLite consensus disorder prediction 143 170 - -
Apr1g0141 580 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0141 Apr-Chr1 1582776 1589981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0141 27 564 MAP Kinase Kinase Kinase AT4G08500 51.520 1.35e-169 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr1g0141 Pkinase 7.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0141 K13414 - gmx:100819999 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0141 1 1582776 1589981 Apr1g0141 1 1582776 1589981 ECH