Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0138 ATGCTTTCTTTCTTTGGTACCTTGTTGTTGCCGGTGATGACAGGGGACCGATGCCACCGGTGGGAGAACATGGCGGGAGAACTGGATGCCACCACCCAGGAGAGGCCCTGCCCAGCCAATTTTCCGGTGGAAATTTCTCAAGACTCCACTGTGTTTGAGATTGATTACTTGTCACAGGCTAGGAAAGCACTCAGCGAGCGTTCCCCCTTTGATGTTGCTGAAGAAACGTCCACTTCTGCTGCAGTTACTCTGCCAAGTGGGTTAGCGAGTTTGCTGAACCGTCACACTGATAACAGAAGGCGCCATAAGAAGTCTCATTCTGGTGGGGATAAGAAGAAATCTTCATCTAGGGATAAGAAGAAGCCCGAAGCATCTAACATTTGGGTTGAGACTGAGGAGTACTTCAGGGACTTGACCTTGGCTGATATTGACACCTTGTTTGAGGCCTCTTCATCTTCGAGTTTAGCGTCTCGTGCGTGTTTCTTGATTCCACACTTGGGAAGTGCTTCTAGGATTAATGCAGGTAGTACTAGTAGTCAGAATGAAAAGGAGCCTTTTCCCAAATTCAATGTAGTTAGTTCTGAGAATCAAAAGAAGTCTTGTGAGGACAACAAAAATGATGATGGTTTCTTGAAACTTGAGTCAGTTGACAATGTTGCTGTTGAAGAAGCTTTGCCTGAGGATGACAAGAATCACCAAACTTCAGATTGTTTTCTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCTTTAGCTTCTGAGCGCCCTTCCAAGAAAAGGAGGCTATTGAGTGGTGATGCTGGTTTGGAGAGAGTTATAATGAGTAGTCCTTGTGATGGGGACCAACCATTTTGCCATTATTGTGGCAGGGGAGACACTGGAAGAGATTCCAACCAGTTGGTCGTCTGCTCCTTTTGTAAAGTTGCGGTTCATCGAAAGTGCTATGGTGTGCATGATGATTTAGATGAATCTTGGTTGTGCTCCTGGTGTAAGCAGAAGGGTCATGTTAAAGAATCTGTGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCATTAAAACCGGTTAATAATAGCGTGGAAGATGCTGTGGCTGTCCAGTTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGCCCATGTAGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTTGGAGAAGTCAAGGAAACCAGGAGAAAAGTAGCGTGTAGTGTTTGCAAAGTGAAGTTTGGTGCTTGTATTCGGTGTAGCCATGGAACCTGCCGGACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGAGCATTTTGCTTGAAGCATTCAAATATACAAGAGAGCCAAAGTATCTTGCCATCTGGAGGCTCTATTGCAGTTAGCAGTGAATTTTCAGAAGCCAATGGTCTTCCAGTGACATTGCCAGTGAGTATTGAACACAATTTGAAAGACTGTAGGAATGGAGGATTAACTTCTGATAGCAGTCTGGACATATTGAACCATAATGATGAACGACAGGATGGAGGATTATCTGATAGTACTCATGACATATTGGGATGTGGTGCTGTGTCACAACATAATATTGGAGTGGTAGGTAGAGCCAGTGATAATGTTGATGCAAGTGTTTTGAAAAAGTTGATTGATCGGGGAAAAGTTGATGTTAAAGATGTAGCATCGGAGATAGGTGTTTTGCCAGATATATTAACTGCAAATATCAATGAAGCGTGTATGGCCCCTGATGTGCGACACAAAGTAGTCAATTGGCTGAAAGACCACGTATATACTAGTAGTGCATTTCAGAGAGGTTTAAAAGTTAAATTCAAACCAGGCAATGTATCAAAAAATGAAAGTGGAGCCACTGATGGTTCTGATGCTTTACCAATATCAGATTCTGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCCCCAAGGAGGAGAACAGTCAGTAACATCAGGATTTTGAAGGATAATAAAGTGATATGTTCATCCGAGGGGGTTACAAATGAGAATGGGATGCCAATGGACAGGTGCAAAGTTAGTCAGTCTAACTGTGACAATCCAGCAAGCTCCAATGAAGCATCCATTCCCAATGCAACTGAATTGAACATAACCAAGTCTGAGGATGTTTTTCATGAAGTTCAAGGCAATGCTGATAAACTTTACAAATCCAGCTTACCTGGATGTGTTTCAGAAGACAAGTCTTGTGTTTGTTTGCAGAATGCTTCTATGCTTTCTGATCAACCCTGTCCTGTTCATTCTGCTTTAGGACTGCCTGATTCTGGTTTCATAAAGAAGGATACACTCTCTAGTTATATCCATCCATACATCAGCAAAAAATTACAGCAGATTTGTGGTTCAAGTGATCAGGAAAATTCTTCTTTGGTTGAATCCTGTGGGGCTATTGGCTGCTCAAGTGGCAAAAATCAGCACTCAACTTGCATTGACATCTCAAAGGCTGAGGAAGTAAATGTGGAGCAGTTGGTTATGGCTAGAAAAATGGGACTATCAGAGTTTCCTCCAGAAGATGAATTGGAGGGGGAGCTTGTATATTTTCAGTATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCTTACTGATAACTTAATCTATAACGTTACCAAGAGTTTGCCACATGAGATTGATAAAGCACATCAATTGAGGTGGGATGCTGTAACTGTTAATCAATATCTACGTAATCTTAGGGAGGCGAAAAAGCAGGGTAGAAAAGAGAGAAAGCACAAGGAAGCACAGGCAGTGTTAGCTGCTGCAACTGCTGCTGCTGCAGCATCTACTAGGGTTTCTTCTTTGCGGAAAGATACCTTAGATGAATCTATGCAACAGGAGAATTTATTAAAATTGGATACTTTAAATGGGAGGACCGGTGCTTGTTCTCAGCCAATGCCGCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAGTTTCGTCAGAGAAATATTCAGATTTTGGCATGCCAACCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATTTGCAGAAGATCTGAGACTATATTAAACCCTATCCTAGTATGCTCTGGTTGCAAGGTTTCAGTGCACTTAGATTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAGTTTTGTGAAGATTTATCATCAAGGAGCTCTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTACGTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAATCTTCTGATGGTCAATGGGTTCATGCCTTCTGCGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAACTGTGCTGAAAGGAGTTGACATTTGCTGTATCTGCCATCGCAAGCATGGTGTATGCCTGAAGTGTTGCTATGGCCATTGTCAGACCACATTTCATCCATCTTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGGATTGCTGGTGGCAAGACACAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCTAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTGCGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAATTAAAGCGGGAATTGGTGTTATGCTCACATGACATACTTGCTTTTAAAAGAGATCATGTTGCTAGGTCTGTACTAGTTCATAGTACTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCGCTTAAAGGGAACACGGAGGGATACAGATCATGCAGTGAAGCACTCCAAAGATCAGATGATGTTACAGTGGACAGCTCAGTTGCTGCTAAGCACCGTGTCAGGGTTGCTGTATCCATGGACACAGACCCGAAATTGGAGGATGACTGCTCAACCTCGCAAAGTCATTATAACAAGATTCCAGATAGGACCCAATTTTCTGGCAAGCAGATTCCTCATAGAGCTGCTGCATCACGTAATACTACAGATGAGTGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACATTTGGAAAAGAGCTTGTTATGACGTCTGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCCGCTGATTGCCTGTCAAATGACAAGCAATCTAATGAGGATGTATTTGCTGTTGGACCAGTGGAGCATGACAGGTAG 4302 0.4254 MLSFFGTLLLPVMTGDRCHRWENMAGELDATTQERPCPANFPVEISQDSTVFEIDYLSQARKALSERSPFDVAEETSTSAAVTLPSGLASLLNRHTDNRRRHKKSHSGGDKKKSSSRDKKKPEASNIWVETEEYFRDLTLADIDTLFEASSSSSLASRACFLIPHLGSASRINAGSTSSQNEKEPFPKFNVVSSENQKKSCEDNKNDDGFLKLESVDNVAVEEALPEDDKNHQTSDCFLSLEWFLGCRNKVSLASERPSKKRRLLSGDAGLERVIMSSPCDGDQPFCHYCGRGDTGRDSNQLVVCSFCKVAVHRKCYGVHDDLDESWLCSWCKQKGHVKESVNPCVLCPKKGGALKPVNNSVEDAVAVQFVHLFCSLWMPEAHVDDLKKMEPVMNVGEVKETRRKVACSVCKVKFGACIRCSHGTCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSNIQESQSILPSGGSIAVSSEFSEANGLPVTLPVSIEHNLKDCRNGGLTSDSSLDILNHNDERQDGGLSDSTHDILGCGAVSQHNIGVVGRASDNVDASVLKKLIDRGKVDVKDVASEIGVLPDILTANINEACMAPDVRHKVVNWLKDHVYTSSAFQRGLKVKFKPGNVSKNESGATDGSDALPISDSGLLDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTNENGMPMDRCKVSQSNCDNPASSNEASIPNATELNITKSEDVFHEVQGNADKLYKSSLPGCVSEDKSCVCLQNASMLSDQPCPVHSALGLPDSGFIKKDTLSSYIHPYISKKLQQICGSSDQENSSLVESCGAIGCSSGKNQHSTCIDISKAEEVNVEQLVMARKMGLSEFPPEDELEGELVYFQYRLLQNAVAKKRLTDNLIYNVTKSLPHEIDKAHQLRWDAVTVNQYLRNLREAKKQGRKERKHKEAQAVLAAATAAAAASTRVSSLRKDTLDESMQQENLLKLDTLNGRTGACSQPMPRAKETLSRVAVTRVSSEKYSDFGMPTSDFSKEQRKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCEFCEDLSSRSSGASAINFWEKPYVVAECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFRRGQIDAVEGMETVLKGVDICCICHRKHGVCLKCCYGHCQTTFHPSCARSAGLYMNVRIAGGKTQHKAYCEKHSLEQKAKAETLKHGIEELKSIRQIRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSTFILPDGSSESATTSLKGNTEGYRSCSEALQRSDDVTVDSSVAAKHRVRVAVSMDTDPKLEDDCSTSQSHYNKIPDRTQFSGKQIPHRAAASRNTTDECGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDVFAVGPVEHDR* 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0138 1433 ProSitePatterns Zinc finger PHD-type signature. 1027 1070 IPR019786 -
Apr1g0138 1433 ProSitePatterns Zinc finger PHD-type signature. 287 332 IPR019786 -
Apr1g0138 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 340 IPR013083 -
Apr1g0138 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1005 1080 IPR013083 -
Apr1g0138 1433 SMART PHD_3 286 333 IPR001965 -
Apr1g0138 1433 SMART PHD_3 1147 1201 IPR001965 -
Apr1g0138 1433 SMART PHD_3 407 463 IPR001965 -
Apr1g0138 1433 SMART PHD_3 1026 1071 IPR001965 -
Apr1g0138 1433 MobiDBLite consensus disorder prediction 96 110 - -
Apr1g0138 1433 PANTHER PHD FINGER PROTEINS 236 471 - -
Apr1g0138 1433 PANTHER PHD FINGER PROTEINS 785 1424 - -
Apr1g0138 1433 SUPERFAMILY FYVE/PHD zinc finger 276 353 IPR011011 -
Apr1g0138 1433 Coils Coil 919 939 - -
Apr1g0138 1433 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 785 1424 - -
Apr1g0138 1433 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 236 471 - -
Apr1g0138 1433 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 463 IPR034732 -
Apr1g0138 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 465 IPR013083 -
Apr1g0138 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1091 1202 IPR013083 -
Apr1g0138 1433 Pfam PHD-zinc-finger like domain 1094 1200 - -
Apr1g0138 1433 Pfam PHD-zinc-finger like domain 344 462 - -
Apr1g0138 1433 ProSiteProfiles Zinc finger PHD-type profile. 284 335 IPR019787 -
Apr1g0138 1433 CDD ePHD 1095 1200 - -
Apr1g0138 1433 MobiDBLite consensus disorder prediction 1330 1349 - -
Apr1g0138 1433 MobiDBLite consensus disorder prediction 1355 1377 - -
Apr1g0138 1433 Pfam PHD-finger 1038 1071 - -
Apr1g0138 1433 Pfam PHD-finger 300 333 - -
Apr1g0138 1433 SUPERFAMILY FYVE/PHD zinc finger 1016 1071 IPR011011 -
Apr1g0138 1433 MobiDBLite consensus disorder prediction 93 124 - -
Apr1g0138 1433 ProSiteProfiles Zinc finger PHD-type profile. 1024 1073 IPR019787 -
Apr1g0138 1433 ProSiteProfiles Extended PHD (ePHD) domain profile. 1092 1201 IPR034732 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0138 281 469 C2H2 Transcription Factor Family AT3G14740 30.729 3.09e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr1g0138 zf-HC5HC2H_2 1.4e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0138 - - gmx:100775631 2183.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0138 1 1549530 1561989 Apr1g0138 1 1549530 1561989 ECH