Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0134 ATGCCTCGTCAAGCTGTTTCGCCGCCACTGCCGCACCCTCGCCCTATGGACCCAAAAATATGGCGAGCATGCGCCGGTGCCTCCGTTCAAATTCCCACGCTCCATTCTAGGGTTTACTACTTCCCTCAGGGGCATTTCGATCAAGCCTCGTCCGTTCCACGCCACCTTTCTAAACTCCTTCGCTCCAAGTCTTTTATTCTCTGTCGCATAACCTCCGTCCAATTCCTTGCCGATCCTCTCACCGACGAGGTTTTTGCCAAACTCGTCCTCGTCCCTGTCTCTGATTACTTCGCCGCGCCTTCCTCTGTTCCTCCAACCGCTGCCTCCGACGATGACGTCGTCTCATTTGCCAAGATTCTCACGCCGTCCGACGCCAACAATGGCGGCGGATTCTCTGTTCCAAGATTCTGCGCTGATTCCATCTTCCCGCCGCTCAACTTCCAGGACGACCCACCCGTTCAGAATCTGTCTGTCACCGACGTTCACGGCGTCGCCTGGGAGTTCCGCCACATCTACCGCGGCACTCCGCGGCGTCACCTGCTCACCACCGGCTGGAGCAAGTTCGTCAACAACAAGAAGCTCGTCGCCGGAGATTCTGTCGTGTTCATGAAGAACTCTAGGGGAGGGCTGTTCGTCGGGGTTCGCCGTGCCACGCGCTTCACTTCCGGAAAAGGAGGCGGCAACGTGGGTTCCAACTGGTCCTTGCAGATTGGAGGGATGGAAAACAGGGTCGAGGAGGAGGAGAAGGAAGAAGAAGAAGAGAATTTGAGCGAGGTTTTTTCGAGGGACGGGAAGGGGAAACTGTCTACGAAGAAGGTGGCGGAGGCAGCGGAATTGGCGGCGCTGAACATGGCGTTTGAGGTTGTTTATTATCCTAAAGCTGGTTGGTCGGAGTTCGTGGTGAATGAAGAAGCTGTGAACGAAGCAATGAGTGTCGCGTGGGGTCCCGGAATGAGAGTGAAAATGGCTATGGAGACCGATGATTCGTCCAGGATGACATGGTTTCAGGGTACGGTTTCATGTGTCTCTGTTAACGAGAATGGCCAATGGCGATACTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAACCTGAAGTGTTGCAGAATTCAAAGTGGGTCAGCCCTTGGCAGGTGGAACTTGTTTCCACCACTCCTGCACTTCATTCAGCATTCCCCTCTGCAAAAAGGTTTAGATCTTCTCAGGGTTCTGAGGTGTTTACTGATGGAGAGGGAGACCCCTTTTCCATGACACGATTCACTAACTCAGCAATGTCACCCCTGAATCAGACATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCACCAAGTTTTTCCAACTTTCCAAGTGATGCGTCTCGTCTGTGTATGGGTAATTCCTTGGGGAACAACATGGTGCCAAGGCTGACAACATTGCCAACAGAGCTAAATGTTGGCAGTCCTCAATCTGACAACTTGTCACCAAATAGCAATAGTAGTTTGCATTCCTGTGCCACAGAATTGGTTGGGAATCACAACTGCAACTCAACAAAACCTGGGAATCGCAGTTTTCCAAGTGATACATCTCGTCTGTGTATGGGTAATTCCCTTGGGAACAACACGGTGCCAAAGCTGACATTATCAACAGAGCTAAATGTTGGTTGTTTTCAATCTGATGACTTGTCACCAAATAGCAATAGTAGTTTGCATTCCTGTGCCACAGAATTGGTTGGGAACCACAACTACAACTCAACAAAACCTAAATCCGTATCGATTCATCTATTTGGTAACCTCATTCAAATTAACAGTGTTGAATGTGATCTGCATGGTACTGGTCTCACTGGAGTCGATAGCCGCAAGGGCTGCAATGAAACTGAAGGCATTAGCAACCCACTGGATGATTCTTTGGCTTGCTCTAAATTGCCTGACAGGCTTGATGACCAATGCCAAAGCGCCTCAAAAGTTGGGACATGGTACTTCTCAAAATAG 1998 0.504 MPRQAVSPPLPHPRPMDPKIWRACAGASVQIPTLHSRVYYFPQGHFDQASSVPRHLSKLLRSKSFILCRITSVQFLADPLTDEVFAKLVLVPVSDYFAAPSSVPPTAASDDDVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFQDDPPVQNLSVTDVHGVAWEFRHIYRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFMKNSRGGLFVGVRRATRFTSGKGGGNVGSNWSLQIGGMENRVEEEEKEEEEENLSEVFSRDGKGKLSTKKVAEAAELAALNMAFEVVYYPKAGWSEFVVNEEAVNEAMSVAWGPGMRVKMAMETDDSSRMTWFQGTVSCVSVNENGQWRYSPWRMLQITWDEPEVLQNSKWVSPWQVELVSTTPALHSAFPSAKRFRSSQGSEVFTDGEGDPFSMTRFTNSAMSPLNQTLLSYGTFPAGMQGARHDLFSAPSFSNFPSDASRLCMGNSLGNNMVPRLTTLPTELNVGSPQSDNLSPNSNSSLHSCATELVGNHNCNSTKPGNRSFPSDTSRLCMGNSLGNNTVPKLTLSTELNVGCFQSDDLSPNSNSSLHSCATELVGNHNYNSTKPKSVSIHLFGNLIQINSVECDLHGTGLTGVDSRKGCNETEGISNPLDDSLACSKLPDRLDDQCQSASKVGTWYFSK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0134 665 Coils Coil 242 262 - -
Apr1g0134 665 CDD B3_DNA 115 216 IPR003340 GO:0003677
Apr1g0134 665 PANTHER AUXIN RESPONSE FACTOR 532 659 - -
Apr1g0134 665 PANTHER AUXIN RESPONSE FACTOR 9 527 - -
Apr1g0134 665 SUPERFAMILY DNA-binding pseudobarrel domain 109 233 IPR015300 -
Apr1g0134 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 532 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr1g0134 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 527 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr1g0134 665 Gene3D - 113 218 IPR015300 -
Apr1g0134 665 Gene3D - 315 387 - -
Apr1g0134 665 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr1g0134 665 SMART B3_2 116 218 IPR003340 GO:0003677
Apr1g0134 665 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Apr1g0134 665 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0134 Apr-Chr1 1510200 1515520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0134 14 521 B3 DNA Binding Superfamily AT1G77850 51.737 8.59e-168 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr1g0134 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0134 - - aprc:113852457 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0134 1 1510200 1515520 Apr1g0134 1 1510200 1515520 ECH
Apr9g0889 9 17096510 17101150 Apr1g0134 1 1510200 1515520 PCT