Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0127 ATGGATATATATGAGCCGTTCCAGCAAGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGGTGGCCTTGGTTCAATTGCTTCCCCAATGTTAATGGAAAACACTAGCATGGAGAGCAAGTCTGAGTATATTCCTAACGAATCAAGAGAGCCTTCTGGAGCAGATCAAGAGACTACAAATAAAGGTGTTAGTAAGGTGCTAAGACGCCTAGCTCAGAATCGAGAGGCTGCGAAAAAGAGTCGGCTGCGGAAAAAGGCTTATGTTCAACAACTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGCTAGAGATTGGGAAAGCAAGGCAGCAGGGTCTGTATATAGGCAGTTCATTAGATGCCAGTTACACGGGATCATCCGAAACAATAAACCCAGGGATTGTTGCATTTGAAATAGAATATGGACATTGGGTTGAAGAGCAACACAGGCGGAATGAAGAACTTAGACATGCATTTCAAACTCAAGCATCTGAAGGACAACTCCATCTACTTGTTCAGAATGTCTTAAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTTTTCTTAATCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGGTCTCGCCCGTCACAGCTTCTAAATATAATCGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGCTAGTATTAACAATCTCCGGCTCTCATCTCAGCAAGCGGAAGATGCTCTTTCACTAGGACTGGATAAACTCCAGCAGAGTCTGGTCCATGACATGGCAGTGGATCGATTTGGTGTAGGAAACTTTCGACTTCAGATGGCTGTTGCTGCGGAAAAATTTGAGGCATTAGAAGGTTTTGTAAACCAGATCACCTTAGGCAACAAACTCTGCTGCACATGTCACGCATCCTGTCAACTCACCAAGCTGCTAGGGGCTTACTGGCTCTTGGGGAATTCTTTCACCGTCTTCGTACTCTTTGTTCTCTTTGGGCTGCTCGTCCATGTGATCTTACACCTTAAAGGAAGAAACCTGCTTCTGCTTCAACTTCAACTTCAACTTCAACTGGATGATCAACCATGTGCTTTACTGAACAGTTACGCAAGTTTTGGATATCATCATATGAGTATGAATGTGAAGTAA 1170 0.4368 MDIYEPFQQVSMWGDSFKVDGGLGSIASPMLMENTSMESKSEYIPNESREPSGADQETTNKGVSKVLRRLAQNREAAKKSRLRKKAYVQQLETSRLKLMQLELEIGKARQQGLYIGSSLDASYTGSSETINPGIVAFEIEYGHWVEEQHRRNEELRHAFQTQASEGQLHLLVQNVLNHYSNLFRMKADAAKADVLFLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIASINNLRLSSQQAEDALSLGLDKLQQSLVHDMAVDRFGVGNFRLQMAVAAEKFEALEGFVNQITLGNKLCCTCHASCQLTKLLGAYWLLGNSFTVFVLFVLFGLLVHVILHLKGRNLLLLQLQLQLQLDDQPCALLNSYASFGYHHMSMNVK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0127 389 PANTHER TRANSCRIPTION FACTOR TGA9 1 299 - -
Apr1g0127 389 Coils Coil 84 111 - -
Apr1g0127 389 CDD bZIP_HBP1b-like 65 117 - -
Apr1g0127 389 Pfam bZIP transcription factor 65 93 IPR004827 GO:0003700|GO:0006355
Apr1g0127 389 SUPERFAMILY Leucine zipper domain 65 98 IPR046347 GO:0003700|GO:0006355
Apr1g0127 389 MobiDBLite consensus disorder prediction 37 62 - -
Apr1g0127 389 SMART brlzneu 61 121 IPR004827 GO:0003700|GO:0006355
Apr1g0127 389 Gene3D - 64 113 - -
Apr1g0127 389 ProSiteProfiles DOG1 domain profile. 134 349 IPR025422 GO:0006351|GO:0043565
Apr1g0127 389 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 299 - -
Apr1g0127 389 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Apr1g0127 389 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0127 Apr-Chr1 1466830 1471337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0127 1 299 Calmodulin-binding Proteins AT5G10030 51.827 2.02e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr1g0127 DOG1 8.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0127 K14431 - gmx:100775332 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0127 1 1466830 1471337 Apr1g0127 1 1466830 1471337 ECH
Apr9g0893 9 17157586 17161182 Apr1g0127 1 1466830 1471337 PCT