Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0121 ATGTCATCATCATCATCGTCGTCGAATTCTCCGTGCGCAGCGTGCAAGATTCAGCGGAGGAAGTGTACTCAGGAATGCGTGTTCGCGCCGTATTTTCCGCCGGACAACCCACAAAGGTTTGCATATGTCCACAAAGTATTCGGAGCCAGCAACGTTGCAAAGCTTCTCAACGAGCTGAACGCGGCGCAGCGTGAGGACGCCGTTAAGTCCCTCGCATACGAGGCAGAAGCGCGTTTGCGGGACCCAGTTTACGGTTGCGTGGGTCTCATATCCATTCTCCAACACAAGCTGAAGCAGATGCAGAATGAACTCAACAACGCTAAGAAAGAACTTGCGTCTTATATTGGACCCCACGCTGTGATTCCTCCTCAGCCACCGCGCAATGCTTCTACTTTCTCGCTCTTTCCGTTCAACGCCACGCCTCCTCCTCAGGATCTTTTCAGGTTCAACGACGACGGAGCCTCCGCTTCACACGGTGGTTTTAACCACCTCTCTGTGTTTTCGCCTTCCCATGCCGATCACTCTTTCCGTCAGACCCAAACGCATCCTCTTCCTCTTCCGCTTCATCACCACCACCACTTAATGTTCTCTCAGATGCAGCCCAAGCCCGAAAGCGACCAGGGAAGGAACACTGCTCCTTCTTGTTGA 648 0.5309 MSSSSSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHKLKQMQNELNNAKKELASYIGPHAVIPPQPPRNASTFSLFPFNATPPPQDLFRFNDDGASASHGGFNHLSVFSPSHADHSFRQTQTHPLPLPLHHHHHLMFSQMQPKPESDQGRNTAPSC* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0121 215 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Apr1g0121 215 Coils Coil 90 110 - -
Apr1g0121 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 7 150 - -
Apr1g0121 215 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Apr1g0121 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0121 Apr-Chr1 1384847 1386642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0121 6 131 AS2 family AT5G66870 72.794 3.44e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr1g0121 LOB 2.9e-42 No_clan