Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0120 ATGACTTCACTTCCCTCTGATGATTCCACTATGAGAGTCATAGAGCAAAAGCACTTTCACCTTGAGGATACTAATGAAATAGAGAGGTTCCAATGGGTGCTCAATCCTCCCAACCCACCACCTCTATGGAAGAAGCTATTTAGTCCACTCAAAGATACCATGCTCTTTTTCTCATCCAAGAACAAAAATTGCATTGGACATGCAGTTTCGTTCTTGGAGTGTTTATTCCCAATCCTTAATTGGTTCAAAAATTACAAAGCTTCCAAGTTTAAGGATGATTTGCTAGCAGGTTTAACACTAGCCAGCCTTAGCATACCTCAGAGTATTGGATATGCTAATTTAGCAAAACTTGATCCTCAATATGGCCTCTACACCAGTGTTGTTCCTCCTCTTATCTATGCTCTAATGGGGAGTTCAAGAGAAATTGCAATTGGACCAGTAGCTGTGGTGTCGTTGCTGCTATCCTCTTTGGTCCCAAAAGTGGTAGATCCTGCTATGGATCCTGTTGCTTACAGAAACGTTATCTTTACTGTGACCTTATTTGCTGGAATCTTTCAAGCTGCATTTGGAGTTTTCAGGTTGGGCTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTAGGATTCATGGCTGGCGCAGCCATCATTATTGGTCTTCAGCAGCTCAAAGGGTTGCTGGGCCTTAATCACTTTACCAATAAAACTGATGCAGTATCCGTGTTGGAATCTGTATATAAGTCACTCCATTATCAAATTACATCAGCAGAAAAGTGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATTTTCCTCTTAATTGCTAGATTTATTGGCAGAAGAAACAAAAAACTTTTCTGGTTTCCTGCAATTGCTCCTCTTCTATCAGTTGTATTATCAACTTTAATTGTGTATTTATCAAAAGCTGATAAGAATGGGGTGAATATAATAAAGCATGTCAAAGGAGGCTTAAATCCAAGTTCGGCTCACCTGTTACAATTCGATGGTCAATATGTTGGTCAAGCAACTAAAATTGGATTGATTTCAGCCGTTATTGCTCTAACTGAAGCAATAGCTGTTGGTCGATCTTTTGCTTCAATTAAAGGATACCATCTTGATGGGAACAAAGAAATGCTAGCAATGGGATGTATGAACATTGCAGGATCTCTCACTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTGAATTTCAGTGCAGGATGTGAAACATCAATATCAAATATTGTGATGGCTGTTACTGTGCTTCTTTGCCTTGAATTATTTACAAGGCTTTTATACTACACTCCTATGGCCATACTTGCTTCTATCATTCTCTCTGCACTTCCTGGACTAATTGACATAAAGGAAGCTCACTATATATGGAAGGTTGACAAATTAGACTTTCTTGCTTGCATTGGTGCTTTCTTAGGCGTCTTGTTTGTATCAGTGGAAATTGGTCTTCTTATTGCAGTGTCAATCTCATTTGCAAAGATACTAATACAATCAATTCGACCTGGTATAGAAGTTCTAGGTAGAGTTCCAAGAACAGAAGCTTTTTGTGATGTTAGTCAATATCCCATGGCCATAAGCACTCCTGGCATCTTGGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCCAATGCTAATTTTGTGAGAGAAAGAATTCTGAAGTGGGTCACGGAAAAAGAAGGCAAGCTTGAAGAAACTGCCAAGGGAGTGGTCCAAGCAGTAATCTTGGACATGACCAACCTGATGAATGTTGATACTTCGGGCATCCTAGCATTGGAGGAACTGCACAAGAGGTTGCTTTCTCGTGGCGTACAATTGGGTGTGGTGAACCCGAGGTGGCAAGTAATTCACAAGCTGAAAGTGGCACACTTTGTGGATAAAATGGGAAAGGAATGGGTTTTCCTAACTGTTGGTGAAGCCGTAGATGCATGTCTGGCCTCTAAATTCCCGGACCCATGA 1983 0.4085 MTSLPSDDSTMRVIEQKHFHLEDTNEIERFQWVLNPPNPPPLWKKLFSPLKDTMLFFSSKNKNCIGHAVSFLECLFPILNWFKNYKASKFKDDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYALMGSSREIAIGPVAVVSLLLSSLVPKVVDPAMDPVAYRNVIFTVTLFAGIFQAAFGVFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGLNHFTNKTDAVSVLESVYKSLHYQITSAEKWYPLNFVIGCSFLIFLLIARFIGRRNKKLFWFPAIAPLLSVVLSTLIVYLSKADKNGVNIIKHVKGGLNPSSAHLLQFDGQYVGQATKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLTSCYVATGSFSRTAVNFSAGCETSISNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDIKEAHYIWKVDKLDFLACIGAFLGVLFVSVEIGLLIAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMAISTPGILVIRISSGSLCFANANFVRERILKWVTEKEGKLEETAKGVVQAVILDMTNLMNVDTSGILALEELHKRLLSRGVQLGVVNPRWQVIHKLKVAHFVDKMGKEWVFLTVGEAVDACLASKFPDP* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0120 660 Pfam STAS domain 529 648 IPR002645 -
Apr1g0120 660 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Apr1g0120 660 PANTHER SLC26A/SULP TRANSPORTER-RELATED 18 659 - -
Apr1g0120 660 Gene3D STAS domain 508 655 IPR036513 -
Apr1g0120 660 SUPERFAMILY SpoIIaa-like 535 652 IPR036513 -
Apr1g0120 660 CDD STAS_SulP_like_sulfate_transporter 529 645 - -
Apr1g0120 660 Pfam Sulfate permease family 90 476 IPR011547 GO:0016021
Apr1g0120 660 TIGRFAM sulP: sulfate permease 77 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Apr1g0120 660 ProSiteProfiles STAS domain profile. 545 652 IPR002645 -
Apr1g0120 660 PANTHER SULFATE TRANSPORTER 18 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0120 Apr-Chr1 1335266 1339654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0120 25 656 Inorganic Solute Cotransporters AT5G10180 63.380 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0120 K17469 - gmx:100805269 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0120 1 1335266 1339654 Apr1g0120 1 1335266 1339654 ECH
Apr9g0908 9 17462767 17467535 Apr1g0120 1 1335266 1339654 PCT